| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37678542
Identifier: 37678542
GI number: 37678542
Start: 367623
End: 369434
Strand: Direct
Name: 37678542
Synonym: VV0358
Alternate gene names: NA
Gene position: 367623-369434 (Clockwise)
Preceding gene: 37678541
Following gene: 37678543
Centisome position: 10.96
GC content: 43.6
Gene sequence:
>1812_bases ATGAGTCTCAAATTAAAAGCGCAAACTGCAATCGACTTAGGACTTTTAAACCTAGCTCGAGTCGCTGGCTATCAACTTGG TGTTCGAAGTGGACTCAACCCAGTTAAGCGCCTTTCTCAAGCCCCTGTTTCGGGGCTTTTGTTTCGACCGCTCTCCACTT TAGTTCAATGTGAATCCAGTCAGCGATACCAATTCTCTCCTTTTGGGTGGAAGCCGAAACGATTTGTCAGTGAATTGAGA TGGGCGGAGAGCACATTAACTGGACAAATCTACTCCAACATGGAAAAGCCTTGGTTCAGTTTGTCTGACTTTGATTCTAA TGTTGGTGATATTAAAGGGATTTGGGAAGCATCTAGATTCGACTGGGTATTAGGCTTAGCCAAGGATTACCTTTCTGGAA GAGAGCAAGCACTTGATGAACTGAATGCAACTGCGAAAGATTGGCTAGAGCACAATCCACCTTATTTAGGGCCGAACTGG AAGTGTGGTCAAGAAGCTTCAATAAGAGTTATGCACTTGGCTATGACGGCTAAATTGCTGAATCAAGTTGAAAGATCAGA ACCCGCACTGTTGGCATTTGTTAAAGCTCACTTAAAACGTATTGCTCCGACAATCTCCTATGCCGTTGCTCAAGATAATA ACCATGGAACTTCTGAAGCGGCCGCTCTATTTATAGGTGGAAGTTGGCTTGTGTCTAATGGTAATAAAAGCGCTGTTCGT TGGCAAAAAATGGGGCGCAAGTGGTTAGAGAATAGAGTAAAGCATTTAATCGACGACGATGGAACTTTCAGCCAGTACTC CGTCAACTACCACCGAGTTATGCTAGATACATACTCAATGGCGGAGCTATGGAGACGAGAACTTAATCTCAAGTCGTTTA GTCCGTCGTTGTATACCAGAATTGGTTTGGCGACGCATTGGTTGTATCAATTAACTCAAGAGGACAATGGAGATGCGCCT AATTTAGGACATAACGATGGGGCAAGGTTGTTACCTTTAAGTGACACGGATTACCGAGACTTTCGTCCAACGGTTCAGCT CGCGTCAATCCTATTCTTGCAGTCATCTGCTTGGGAAAAAGCAGGTAGCTATGATGAACCACTTAAACTTCTGGGGTTAA GTAAGCCAAAGCAAGCACTTAACAAACCAAGTTCATTCCATTTTGCACAAGGGGGATACGCTGGGTTAAGAAGCCAAACG GGAGCGTTTGTACTATTCAATTACCCTATCTTCCGTTTTCGACCTGCTCAAAACGATGCCCTGCATGTGGACTTTTGGCT TGATGGCGTAAACTTGCTAAGAGACGGTGGCACCTTTAGTTACAATGCTGGTCAAGCATATATCGATTACTATGGTGGTA CGCAAAGTCATAACACCGTTCAGTTTGATGAGCATGAACAAATGCCACGCTTGAGTAGATTTCTCTTAGGTGCCTGGCTT AAGGCTGAAAATGTGCATTGGGATGAAGCTCGACAATATTGTAGTGCTAGTTACCGCGACTATTTTGGGTGCGGTCATAA AAGATATGTCTCTCTTTCAAACAGTACGCTGAGAGTTGTAGATGATATCCATGGCGTGCAGAAAAAAGCGATACTACGTT GGCGTTTAAACCCAGGGAAATGGATTATTGAAGGTAATCGAGTCACTAACCATACTCATTCTATAACGATAAGTAGTAAT ACCGACATCAAACGGCTGGAGTTAGTCGAAGGAAAGGAGTCGCGCTATTACTACCAAGAAACTTCCATTCCCGTTCTGGA AATCGAAGTTACTTCAGATGGCCAAATAACGACAGAGTATAATTACAGCTAA
Upstream 100 bases:
>100_bases GCGCTATTGAATCAGGTAAAGAGTCACCAATTCCAGCTCGAGAGTTGTTTGAGGTAGCAAGAGTTACCATTGAAATAGCG GATCAATTGCGTAAACAACA
Downstream 100 bases:
>100_bases TGAATATTCTTTATTTTCACCAGCACTTTTCAACACCTAAAGGTTCTACTGGAATACGTTCATATGAAATGGCAAGGCGC CTTATACATCATGGGCATAA
Product: hypothetical protein
Products: NA
Alternate protein names: Cytoplasmic Protein; Heparinase II/III-Like Protein
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MSLKLKAQTAIDLGLLNLARVAGYQLGVRSGLNPVKRLSQAPVSGLLFRPLSTLVQCESSQRYQFSPFGWKPKRFVSELR WAESTLTGQIYSNMEKPWFSLSDFDSNVGDIKGIWEASRFDWVLGLAKDYLSGREQALDELNATAKDWLEHNPPYLGPNW KCGQEASIRVMHLAMTAKLLNQVERSEPALLAFVKAHLKRIAPTISYAVAQDNNHGTSEAAALFIGGSWLVSNGNKSAVR WQKMGRKWLENRVKHLIDDDGTFSQYSVNYHRVMLDTYSMAELWRRELNLKSFSPSLYTRIGLATHWLYQLTQEDNGDAP NLGHNDGARLLPLSDTDYRDFRPTVQLASILFLQSSAWEKAGSYDEPLKLLGLSKPKQALNKPSSFHFAQGGYAGLRSQT GAFVLFNYPIFRFRPAQNDALHVDFWLDGVNLLRDGGTFSYNAGQAYIDYYGGTQSHNTVQFDEHEQMPRLSRFLLGAWL KAENVHWDEARQYCSASYRDYFGCGHKRYVSLSNSTLRVVDDIHGVQKKAILRWRLNPGKWIIEGNRVTNHTHSITISSN TDIKRLELVEGKESRYYYQETSIPVLEIEVTSDGQITTEYNYS
Sequences:
>Translated_603_residues MSLKLKAQTAIDLGLLNLARVAGYQLGVRSGLNPVKRLSQAPVSGLLFRPLSTLVQCESSQRYQFSPFGWKPKRFVSELR WAESTLTGQIYSNMEKPWFSLSDFDSNVGDIKGIWEASRFDWVLGLAKDYLSGREQALDELNATAKDWLEHNPPYLGPNW KCGQEASIRVMHLAMTAKLLNQVERSEPALLAFVKAHLKRIAPTISYAVAQDNNHGTSEAAALFIGGSWLVSNGNKSAVR WQKMGRKWLENRVKHLIDDDGTFSQYSVNYHRVMLDTYSMAELWRRELNLKSFSPSLYTRIGLATHWLYQLTQEDNGDAP NLGHNDGARLLPLSDTDYRDFRPTVQLASILFLQSSAWEKAGSYDEPLKLLGLSKPKQALNKPSSFHFAQGGYAGLRSQT GAFVLFNYPIFRFRPAQNDALHVDFWLDGVNLLRDGGTFSYNAGQAYIDYYGGTQSHNTVQFDEHEQMPRLSRFLLGAWL KAENVHWDEARQYCSASYRDYFGCGHKRYVSLSNSTLRVVDDIHGVQKKAILRWRLNPGKWIIEGNRVTNHTHSITISSN TDIKRLELVEGKESRYYYQETSIPVLEIEVTSDGQITTEYNYS >Mature_602_residues SLKLKAQTAIDLGLLNLARVAGYQLGVRSGLNPVKRLSQAPVSGLLFRPLSTLVQCESSQRYQFSPFGWKPKRFVSELRW AESTLTGQIYSNMEKPWFSLSDFDSNVGDIKGIWEASRFDWVLGLAKDYLSGREQALDELNATAKDWLEHNPPYLGPNWK CGQEASIRVMHLAMTAKLLNQVERSEPALLAFVKAHLKRIAPTISYAVAQDNNHGTSEAAALFIGGSWLVSNGNKSAVRW QKMGRKWLENRVKHLIDDDGTFSQYSVNYHRVMLDTYSMAELWRRELNLKSFSPSLYTRIGLATHWLYQLTQEDNGDAPN LGHNDGARLLPLSDTDYRDFRPTVQLASILFLQSSAWEKAGSYDEPLKLLGLSKPKQALNKPSSFHFAQGGYAGLRSQTG AFVLFNYPIFRFRPAQNDALHVDFWLDGVNLLRDGGTFSYNAGQAYIDYYGGTQSHNTVQFDEHEQMPRLSRFLLGAWLK AENVHWDEARQYCSASYRDYFGCGHKRYVSLSNSTLRVVDDIHGVQKKAILRWRLNPGKWIIEGNRVTNHTHSITISSNT DIKRLELVEGKESRYYYQETSIPVLEIEVTSDGQITTEYNYS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68556; Mature: 68425
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKLKAQTAIDLGLLNLARVAGYQLGVRSGLNPVKRLSQAPVSGLLFRPLSTLVQCESS CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCC QRYQFSPFGWKPKRFVSELRWAESTLTGQIYSNMEKPWFSLSDFDSNVGDIKGIWEASRF CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCHHH DWVLGLAKDYLSGREQALDELNATAKDWLEHNPPYLGPNWKCGQEASIRVMHLAMTAKLL HHHHHHHHHHHCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH NQVERSEPALLAFVKAHLKRIAPTISYAVAQDNNHGTSEAAALFIGGSWLVSNGNKSAVR HHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCEEEEECCCCHHHH WQKMGRKWLENRVKHLIDDDGTFSQYSVNYHRVMLDTYSMAELWRRELNLKSFSPSLYTR HHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEEEEHHHHHHHHHHHCCCCCCCCHHHHH IGLATHWLYQLTQEDNGDAPNLGHNDGARLLPLSDTDYRDFRPTVQLASILFLQSSAWEK HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH AGSYDEPLKLLGLSKPKQALNKPSSFHFAQGGYAGLRSQTGAFVLFNYPIFRFRPAQNDA CCCCCCCHHHHCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEECCEEEEECCCCCE LHVDFWLDGVNLLRDGGTFSYNAGQAYIDYYGGTQSHNTVQFDEHEQMPRLSRFLLGAWL EEEEEEECCHHHHCCCCCEEECCCCEEEEECCCCCCCCCEECCCHHCCHHHHHHHHHHHH KAENVHWDEARQYCSASYRDYFGCGHKRYVSLSNSTLRVVDDIHGVQKKAILRWRLNPGK HCCCCCHHHHHHHHHCCHHHHHCCCCEEEEEECCCEEEEHHHHHHHHHEEEEEEEECCCC WIIEGNRVTNHTHSITISSNTDIKRLELVEGKESRYYYQETSIPVLEIEVTSDGQITTEY EEEECCEEECCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCEEEEEEECCCCEEEEEC NYS CCC >Mature Secondary Structure SLKLKAQTAIDLGLLNLARVAGYQLGVRSGLNPVKRLSQAPVSGLLFRPLSTLVQCESS CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCC QRYQFSPFGWKPKRFVSELRWAESTLTGQIYSNMEKPWFSLSDFDSNVGDIKGIWEASRF CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCHHH DWVLGLAKDYLSGREQALDELNATAKDWLEHNPPYLGPNWKCGQEASIRVMHLAMTAKLL HHHHHHHHHHHCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH NQVERSEPALLAFVKAHLKRIAPTISYAVAQDNNHGTSEAAALFIGGSWLVSNGNKSAVR HHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCEEEEECCCCHHHH WQKMGRKWLENRVKHLIDDDGTFSQYSVNYHRVMLDTYSMAELWRRELNLKSFSPSLYTR HHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEEEEHHHHHHHHHHHCCCCCCCCHHHHH IGLATHWLYQLTQEDNGDAPNLGHNDGARLLPLSDTDYRDFRPTVQLASILFLQSSAWEK HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH AGSYDEPLKLLGLSKPKQALNKPSSFHFAQGGYAGLRSQTGAFVLFNYPIFRFRPAQNDA CCCCCCCHHHHCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEECCEEEEECCCCCE LHVDFWLDGVNLLRDGGTFSYNAGQAYIDYYGGTQSHNTVQFDEHEQMPRLSRFLLGAWL EEEEEEECCHHHHCCCCCEEECCCCEEEEECCCCCCCCCEECCCHHCCHHHHHHHHHHHH KAENVHWDEARQYCSASYRDYFGCGHKRYVSLSNSTLRVVDDIHGVQKKAILRWRLNPGK HCCCCCHHHHHHHHHCCHHHHHCCCCEEEEEECCCEEEEHHHHHHHHHEEEEEEEECCCC WIIEGNRVTNHTHSITISSNTDIKRLELVEGKESRYYYQETSIPVLEIEVTSDGQITTEY EEEECCEEECCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCEEEEEEECCCCEEEEEC NYS CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA