| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37678538
Identifier: 37678538
GI number: 37678538
Start: 362904
End: 364055
Strand: Direct
Name: 37678538
Synonym: VV0354
Alternate gene names: NA
Gene position: 362904-364055 (Clockwise)
Preceding gene: 37678537
Following gene: 37678539
Centisome position: 10.82
GC content: 34.98
Gene sequence:
>1152_bases ATGATTATTATGACTAAAAATAGAGAAAACCAAATCTGTACTAATTGTGTTATGGACACAACTGACTCAAAAATTACATT TGACTCAAAAGGTGTTTGCGATCACTGTAATGATTTTTACGAGAACGTTCAACCTAATTGGCATACTGACGAGAAAGGTC ATCTAGAGCTTGAGAGAATTATCACCAAGATAAAAAAAGATGGTGAAGGTAGAGATTTTGACTGCATTATGGGCATGAGT GGAGGCGCTGATAGTTCTTATTTATTGCATGTCGCAGTTAAGAAATATGGCTTGAGACCGTTAGTTTTCCATGTTGATGG CGGTTGGAACTCGCAAATTGCAGTTAATAACATCAATGTAATGATTGAAAAGTTAGGTCTAGATCTATATACAGAAGTAA TTAACTGGGAGGAAATGAAAGCTTTTCAAAAGGCGTACTTTAAAGCTGGTGTTTCTAATATAGACATCCCACAAGATCAT GCATTTATTGCAACATTATATAACTTCGCTGCAAAACATAAGATAAAGTATATTTTGAATGGCGGTAATATATCAACTGA GTGTGTGCGTAACCCTCTTGAATGGATATATTATGGTACTGATATGGCGCAGATCAAAGATATTAGAAAGCGCTTTTGTG ATAATTCTCTAAAAACCTATCCTTTTAGCAATGTATTAAAGCACAAACTTTATCTTCGTTATATTCAAAGGATACAAGTA GTTAAGCCGTTAAATTATTTTCCTTATATAAAAGAAGAAGCAATGAAAGAGCTAGAACGTGAGTATGGCTGGGTACCATA TCCACAAAAGCATTTCGAAAGTCGCTTTACGCGTTTTTATGAAGGATATTGGCTGCCACGTAAGTTTGGTTACGATACTC GTAAGGTTCAGTATTCAAGTTTGATCTTAACGGGTCAAATGACCAGAGAAGAGGCGATAGAAAAATTAAAATTTCCGGCA ATAACTGATGAAGACGGTAAACATGATCTTGAATATATTGCCAACAAGCTTGATATTCCTGTTTCAGAGTTACAAAGTTA CTTTGAACAACCGAACAAAACATACAAAGATTACAATAATCAAGAGTCTATGTTTGAGTTTGGAGCGAAAGTATTGCGAT GGTTAGGTGTTGAGAGGTCTATTAAACGATGA
Upstream 100 bases:
>100_bases CTGGTAATGCGCCTGAGCTTAGATGCTACGTTGAAAGTGGTTGTCTTGAAAGTTTAGAAGTGCTCTTAAAATCTGTTTTG AAAAATATTGAAGAAATGCA
Downstream 100 bases:
>100_bases TTACTATCGTTGATTATGGTCTTGGTAATATCAAGGCATTTGCTAACTTATACAAGAAACTGAATATTGAGTTAGTGTTT GCTAGTGATGTAAATGACCT
Product: putitive LPS biosynthesis protein
Products: NA
Alternate protein names: N-Acetyl Sugar Amidotransferase; LPS Biosynthesis Protein; PP-Loop Superfamily Protein; Lipopolysaccharide Synthesis Protein; Glutamine Amidotransferase Class-II; ATPase; ExsB Family Protein; Lipopolysaccharide Biosynthesis Protein; Cell Cycle Control ATPase; PP-Loop Domain-Containing Protein; PP-Loop Domain Protein; Putitive LPS Biosynthesis Protein
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MIIMTKNRENQICTNCVMDTTDSKITFDSKGVCDHCNDFYENVQPNWHTDEKGHLELERIITKIKKDGEGRDFDCIMGMS GGADSSYLLHVAVKKYGLRPLVFHVDGGWNSQIAVNNINVMIEKLGLDLYTEVINWEEMKAFQKAYFKAGVSNIDIPQDH AFIATLYNFAAKHKIKYILNGGNISTECVRNPLEWIYYGTDMAQIKDIRKRFCDNSLKTYPFSNVLKHKLYLRYIQRIQV VKPLNYFPYIKEEAMKELEREYGWVPYPQKHFESRFTRFYEGYWLPRKFGYDTRKVQYSSLILTGQMTREEAIEKLKFPA ITDEDGKHDLEYIANKLDIPVSELQSYFEQPNKTYKDYNNQESMFEFGAKVLRWLGVERSIKR
Sequences:
>Translated_383_residues MIIMTKNRENQICTNCVMDTTDSKITFDSKGVCDHCNDFYENVQPNWHTDEKGHLELERIITKIKKDGEGRDFDCIMGMS GGADSSYLLHVAVKKYGLRPLVFHVDGGWNSQIAVNNINVMIEKLGLDLYTEVINWEEMKAFQKAYFKAGVSNIDIPQDH AFIATLYNFAAKHKIKYILNGGNISTECVRNPLEWIYYGTDMAQIKDIRKRFCDNSLKTYPFSNVLKHKLYLRYIQRIQV VKPLNYFPYIKEEAMKELEREYGWVPYPQKHFESRFTRFYEGYWLPRKFGYDTRKVQYSSLILTGQMTREEAIEKLKFPA ITDEDGKHDLEYIANKLDIPVSELQSYFEQPNKTYKDYNNQESMFEFGAKVLRWLGVERSIKR >Mature_383_residues MIIMTKNRENQICTNCVMDTTDSKITFDSKGVCDHCNDFYENVQPNWHTDEKGHLELERIITKIKKDGEGRDFDCIMGMS GGADSSYLLHVAVKKYGLRPLVFHVDGGWNSQIAVNNINVMIEKLGLDLYTEVINWEEMKAFQKAYFKAGVSNIDIPQDH AFIATLYNFAAKHKIKYILNGGNISTECVRNPLEWIYYGTDMAQIKDIRKRFCDNSLKTYPFSNVLKHKLYLRYIQRIQV VKPLNYFPYIKEEAMKELEREYGWVPYPQKHFESRFTRFYEGYWLPRKFGYDTRKVQYSSLILTGQMTREEAIEKLKFPA ITDEDGKHDLEYIANKLDIPVSELQSYFEQPNKTYKDYNNQESMFEFGAKVLRWLGVERSIKR
Specific function: Unknown
COG id: COG0037
COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45066; Mature: 45066
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIMTKNRENQICTNCVMDTTDSKITFDSKGVCDHCNDFYENVQPNWHTDEKGHLELERI CEEEECCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH ITKIKKDGEGRDFDCIMGMSGGADSSYLLHVAVKKYGLRPLVFHVDGGWNSQIAVNNINV HHHHHCCCCCCCEEEEECCCCCCCCHHHEEEEHHHHCCCEEEEEECCCCCCEEEECHHHH MIEKLGLDLYTEVINWEEMKAFQKAYFKAGVSNIDIPQDHAFIATLYNFAAKHKIKYILN HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEE GGNISTECVRNPLEWIYYGTDMAQIKDIRKRFCDNSLKTYPFSNVLKHKLYLRYIQRIQV CCCCCHHHHHCCHHEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH VKPLNYFPYIKEEAMKELEREYGWVPYPQKHFESRFTRFYEGYWLPRKFGYDTRKVQYSS HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEHE LILTGQMTREEAIEKLKFPAITDEDGKHDLEYIANKLDIPVSELQSYFEQPNKTYKDYNN EEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCC QESMFEFGAKVLRWLGVERSIKR HHHHHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure MIIMTKNRENQICTNCVMDTTDSKITFDSKGVCDHCNDFYENVQPNWHTDEKGHLELERI CEEEECCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH ITKIKKDGEGRDFDCIMGMSGGADSSYLLHVAVKKYGLRPLVFHVDGGWNSQIAVNNINV HHHHHCCCCCCCEEEEECCCCCCCCHHHEEEEHHHHCCCEEEEEECCCCCCEEEECHHHH MIEKLGLDLYTEVINWEEMKAFQKAYFKAGVSNIDIPQDHAFIATLYNFAAKHKIKYILN HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEE GGNISTECVRNPLEWIYYGTDMAQIKDIRKRFCDNSLKTYPFSNVLKHKLYLRYIQRIQV CCCCCHHHHHCCHHEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH VKPLNYFPYIKEEAMKELEREYGWVPYPQKHFESRFTRFYEGYWLPRKFGYDTRKVQYSS HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEHE LILTGQMTREEAIEKLKFPAITDEDGKHDLEYIANKLDIPVSELQSYFEQPNKTYKDYNN EEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCC QESMFEFGAKVLRWLGVERSIKR HHHHHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA