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The map label for this gene is radC

Identifier: 37678469

GI number: 37678469

Start: 296776

End: 297450

Strand: Direct

Name: radC

Synonym: VV0285

Alternate gene names: 37678469

Gene position: 296776-297450 (Clockwise)

Preceding gene: 37678468

Following gene: 37678470

Centisome position: 8.85

GC content: 47.7

Gene sequence:

>675_bases
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAATTGCTTCAGCGAGGGCCTCAATCTTTGTCTGATGC
CGAGTTGCTTGCGATCTTTTTACGAACAGGCACACAAGGAATGAACGTAATTGAACTCGCTGATTTTCTGTTGCGAGACT
TTGGTTCGCTGAGAAAACTCTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAGTACGTT
CAATTACAAGCTGTTTTAGAAATGACGCAACGTTATTTGGCCGAAACACTGCAACGTGGTGATGCGCTCACCAGTCCTCA
GCATACCAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGACAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCGGCCGCTTTAATATTGGCGCACAACCATCCCTCTGGAGTGGCAGAGCCAAGCCAAGCAGACCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTGGTGGGCGATGGGG
AAGTGGTTTCCTTTGCGGAAAGAGGCTGGATTTGA

Upstream 100 bases:

>100_bases
TACATTATCTTCTTCTATTAATAACGAACCAGCATCGTCATACTAGACTTTGCTGGTTTTCTCGTTGCAATAGGCGCATC
TAAGATGACTGAGAGAGACG

Downstream 100 bases:

>100_bases
GTTAATAAAATCATCGCTCTTGACAGGCAAACTTTTTGTTGTTCATAAGTGAGTTTCTGCTACAATCCTCGCCACTCAAA
ATTTTTAACTTACATTCAGC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Sequences:

>Translated_224_residues
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI
>Mature_223_residues
SLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYVQ
LQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKRA
LHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=222, Percent_Identity=48.6486486486487, Blast_Score=224, Evalue=5e-60,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=51.7482517482517, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=51.7482517482517, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI1788997, Length=139, Percent_Identity=51.7985611510791, Blast_Score=140, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y285_VIBVY (Q7MPS7)

Other databases:

- EMBL:   BA000037
- RefSeq:   NP_933078.1
- ProteinModelPortal:   Q7MPS7
- SMR:   Q7MPS7
- STRING:   Q7MPS7
- GeneID:   2623052
- GenomeReviews:   BA000037_GR
- KEGG:   vvy:VV0285
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   VVUL196600:VV0285-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25340; Mature: 25209

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKL
CCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FSADEQSFCRHKGLGQAKYVQLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDR
HCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKRALHYNAAALILAHNHPSGVA
CCCEEEEEEECCCCCEEHHHHHCCCCCCHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCC
EPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure 
SLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKL
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FSADEQSFCRHKGLGQAKYVQLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDR
HCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKRALHYNAAALILAHNHPSGVA
CCCEEEEEEECCCCCEEHHHHHCCCCCCHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCC
EPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA