| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37678451
Identifier: 37678451
GI number: 37678451
Start: 278743
End: 279885
Strand: Direct
Name: 37678451
Synonym: VV0267
Alternate gene names: NA
Gene position: 278743-279885 (Clockwise)
Preceding gene: 37678450
Following gene: 37678452
Centisome position: 8.31
GC content: 41.38
Gene sequence:
>1143_bases ATGAAAGAGTATACTTTAAGGGATGTTCTTATCCGCCAAAAAGAGGCCATCACCGTTGAGGATGATGCTGAGTATAAGCG CATTACCATTAAAATGAATGGTAATGGCGTGCTCCTTAGAGATGAAGTCATTGGTGACGCTATAGGAACTAAGCGCCAGT TTCTGGTGAGTTCTGATCAGTTTGTGCTTTCAAAAATTGACGCAAGGAATGGTGCTTTCGGAATAGTGCCTAAAAGCTGT GATGGAGCAATTATTACAGGAAACTTTTGGGCATTTGACGTCAACTCCGAACTTGCAGATGTTAAATACCTCGATTTCAT GTCTAAAACACCAGAGTTCAAAGACTTTTGTATCGTTGCAAGCGAAGGTACTACTAATCGAAAGTACCTTGACGAAAATA AGTTTCTTGATAAACGGATTTTGCTACCTGAGCTCGCAGAGCAGAAAAAAGTGGTTGCTAAGATCTTAAAGTTTAAGAAT AAGATAGAGCTAGCGCGGAAAATCCGAAACGAGATTTTAAGTGATCTCTACGTGCTGTTAAACAGCACATTTCACAAATT AATTGAAGGCGCTGTCTACAAGCCGATGTCGAAAGTGGCACCTCTTGAGCGCCGTAAAGTTGAGATCGATGTGAACGCGG AGTACCCAGAGCTTGGTGTGCGTTGTTTTGGTAACGGTACTTTCCACAAGCCTATTCTTAACGGAATGGACGTTGGTACC AAAAAGCTGTACCAAATGGTTCCCGGTGACTTGGTGTTCAGTAATGTTTTTGCTTGGGAAGGTGCGATCGCGGTTGTTAA AAAAGAAGACGAAGGTCGTGTCGGTTCGCATCGTTTTATAACGTGTTTACCTAAATCAGGAGTGGTGACAGCCGATTTCC TTTGCTTTTATTTTCTAACGACTGAGGGGTTAGAGAAAATACAAGCAGCATCCCCTGGAGGTGCTGGAAGGAATAGAACT TTAGGACTTAAGAAGCTAGAAAATATCGAGGTTCCTGTACCCGATTACGATAAGCAGCTTTGGTTTAATCAACTGCAAAG CTATGTTGAAAAAATTAAACAAGCTCAATCAGAAAATGCAACTGAGTTAGAGGCTCTGATGCCTTCAATTTTAGATAAAG CCTTTAAGGGAGAATTGGTTTAA
Upstream 100 bases:
>100_bases AGCCTATGGATTTGATAGAGAAAATAACCACGAAAGAAGAGTCTCTTTTAGCGATCTTAGAACAGATTAAAGCCGAAATA AGCACTCAAGGTATCTCTAA
Downstream 100 bases:
>100_bases TGTCTATGCCTGCACCGACGCTTGCTTATGATGCTGGCACCCAGCCTGTTATTGCTCATGGCTTGTCTTATCAGGACGAG CAAGTGAGCGAGATGTTAGC
Product: type I restriction-modification enzyme, specificity subunit
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQFVLSKIDARNGAFGIVPKSC DGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVASEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKN KIELARKIRNEILSDLYVLLNSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLTTEGLEKIQAASPGGAGRNRT LGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENATELEALMPSILDKAFKGELV
Sequences:
>Translated_380_residues MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQFVLSKIDARNGAFGIVPKSC DGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVASEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKN KIELARKIRNEILSDLYVLLNSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLTTEGLEKIQAASPGGAGRNRT LGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENATELEALMPSILDKAFKGELV >Mature_380_residues MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQFVLSKIDARNGAFGIVPKSC DGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVASEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKN KIELARKIRNEILSDLYVLLNSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLTTEGLEKIQAASPGGAGRNRT LGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENATELEALMPSILDKAFKGELV
Specific function: Unknown
COG id: COG0732
COG function: function code V; Restriction endonuclease S subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42813; Mature: 42813
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQ CCCCHHHHHHHHHCCCEEEECCCCEEEEEEEECCCEEEEEHHHHHHHHCCCHHEEECCCH FVLSKIDARNGAFGIVPKSCDGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVA HHHHHHCCCCCCEEECCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEE SEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKNKIELARKIRNEILSDLYVLL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT HHHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCH KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLT HHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH TEGLEKIQAASPGGAGRNRTLGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENA HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH TELEALMPSILDKAFKGELV HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQ CCCCHHHHHHHHHCCCEEEECCCCEEEEEEEECCCEEEEEHHHHHHHHCCCHHEEECCCH FVLSKIDARNGAFGIVPKSCDGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVA HHHHHHCCCCCCEEECCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEE SEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKNKIELARKIRNEILSDLYVLL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT HHHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCH KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLT HHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH TEGLEKIQAASPGGAGRNRTLGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENA HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH TELEALMPSILDKAFKGELV HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA