Definition Vibrio vulnificus YJ016 chromosome I, complete sequence.
Accession NC_005139
Length 3,354,505

Click here to switch to the map view.

The map label for this gene is 37678451

Identifier: 37678451

GI number: 37678451

Start: 278743

End: 279885

Strand: Direct

Name: 37678451

Synonym: VV0267

Alternate gene names: NA

Gene position: 278743-279885 (Clockwise)

Preceding gene: 37678450

Following gene: 37678452

Centisome position: 8.31

GC content: 41.38

Gene sequence:

>1143_bases
ATGAAAGAGTATACTTTAAGGGATGTTCTTATCCGCCAAAAAGAGGCCATCACCGTTGAGGATGATGCTGAGTATAAGCG
CATTACCATTAAAATGAATGGTAATGGCGTGCTCCTTAGAGATGAAGTCATTGGTGACGCTATAGGAACTAAGCGCCAGT
TTCTGGTGAGTTCTGATCAGTTTGTGCTTTCAAAAATTGACGCAAGGAATGGTGCTTTCGGAATAGTGCCTAAAAGCTGT
GATGGAGCAATTATTACAGGAAACTTTTGGGCATTTGACGTCAACTCCGAACTTGCAGATGTTAAATACCTCGATTTCAT
GTCTAAAACACCAGAGTTCAAAGACTTTTGTATCGTTGCAAGCGAAGGTACTACTAATCGAAAGTACCTTGACGAAAATA
AGTTTCTTGATAAACGGATTTTGCTACCTGAGCTCGCAGAGCAGAAAAAAGTGGTTGCTAAGATCTTAAAGTTTAAGAAT
AAGATAGAGCTAGCGCGGAAAATCCGAAACGAGATTTTAAGTGATCTCTACGTGCTGTTAAACAGCACATTTCACAAATT
AATTGAAGGCGCTGTCTACAAGCCGATGTCGAAAGTGGCACCTCTTGAGCGCCGTAAAGTTGAGATCGATGTGAACGCGG
AGTACCCAGAGCTTGGTGTGCGTTGTTTTGGTAACGGTACTTTCCACAAGCCTATTCTTAACGGAATGGACGTTGGTACC
AAAAAGCTGTACCAAATGGTTCCCGGTGACTTGGTGTTCAGTAATGTTTTTGCTTGGGAAGGTGCGATCGCGGTTGTTAA
AAAAGAAGACGAAGGTCGTGTCGGTTCGCATCGTTTTATAACGTGTTTACCTAAATCAGGAGTGGTGACAGCCGATTTCC
TTTGCTTTTATTTTCTAACGACTGAGGGGTTAGAGAAAATACAAGCAGCATCCCCTGGAGGTGCTGGAAGGAATAGAACT
TTAGGACTTAAGAAGCTAGAAAATATCGAGGTTCCTGTACCCGATTACGATAAGCAGCTTTGGTTTAATCAACTGCAAAG
CTATGTTGAAAAAATTAAACAAGCTCAATCAGAAAATGCAACTGAGTTAGAGGCTCTGATGCCTTCAATTTTAGATAAAG
CCTTTAAGGGAGAATTGGTTTAA

Upstream 100 bases:

>100_bases
AGCCTATGGATTTGATAGAGAAAATAACCACGAAAGAAGAGTCTCTTTTAGCGATCTTAGAACAGATTAAAGCCGAAATA
AGCACTCAAGGTATCTCTAA

Downstream 100 bases:

>100_bases
TGTCTATGCCTGCACCGACGCTTGCTTATGATGCTGGCACCCAGCCTGTTATTGCTCATGGCTTGTCTTATCAGGACGAG
CAAGTGAGCGAGATGTTAGC

Product: type I restriction-modification enzyme, specificity subunit

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQFVLSKIDARNGAFGIVPKSC
DGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVASEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKN
KIELARKIRNEILSDLYVLLNSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT
KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLTTEGLEKIQAASPGGAGRNRT
LGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENATELEALMPSILDKAFKGELV

Sequences:

>Translated_380_residues
MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQFVLSKIDARNGAFGIVPKSC
DGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVASEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKN
KIELARKIRNEILSDLYVLLNSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT
KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLTTEGLEKIQAASPGGAGRNRT
LGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENATELEALMPSILDKAFKGELV
>Mature_380_residues
MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQFVLSKIDARNGAFGIVPKSC
DGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVASEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKN
KIELARKIRNEILSDLYVLLNSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT
KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLTTEGLEKIQAASPGGAGRNRT
LGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENATELEALMPSILDKAFKGELV

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42813; Mature: 42813

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQ
CCCCHHHHHHHHHCCCEEEECCCCEEEEEEEECCCEEEEEHHHHHHHHCCCHHEEECCCH
FVLSKIDARNGAFGIVPKSCDGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVA
HHHHHHCCCCCCEEECCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEE
SEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKNKIELARKIRNEILSDLYVLL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT
HHHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCH
KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLT
HHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
TEGLEKIQAASPGGAGRNRTLGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENA
HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
TELEALMPSILDKAFKGELV
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKEYTLRDVLIRQKEAITVEDDAEYKRITIKMNGNGVLLRDEVIGDAIGTKRQFLVSSDQ
CCCCHHHHHHHHHCCCEEEECCCCEEEEEEEECCCEEEEEHHHHHHHHCCCHHEEECCCH
FVLSKIDARNGAFGIVPKSCDGAIITGNFWAFDVNSELADVKYLDFMSKTPEFKDFCIVA
HHHHHHCCCCCCEEECCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEE
SEGTTNRKYLDENKFLDKRILLPELAEQKKVVAKILKFKNKIELARKIRNEILSDLYVLL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSTFHKLIEGAVYKPMSKVAPLERRKVEIDVNAEYPELGVRCFGNGTFHKPILNGMDVGT
HHHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCH
KKLYQMVPGDLVFSNVFAWEGAIAVVKKEDEGRVGSHRFITCLPKSGVVTADFLCFYFLT
HHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
TEGLEKIQAASPGGAGRNRTLGLKKLENIEVPVPDYDKQLWFNQLQSYVEKIKQAQSENA
HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
TELEALMPSILDKAFKGELV
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA