Click here to switch to the map view.

The map label for this gene is rbn

Identifier: 37678387

GI number: 37678387

Start: 216223

End: 217176

Strand: Direct

Name: rbn

Synonym: VV0203

Alternate gene names: 37678387

Gene position: 216223-217176 (Clockwise)

Preceding gene: 37678385

Following gene: 37678388

Centisome position: 6.45

GC content: 47.27

Gene sequence:

>954_bases
ATGGTTAGGACTATGAACCAGTTGTTTGGCAGTGACAAGTTGAGATTGCCGCAAAGGGCGCAAGCGGGCATTGCATTTGT
TCGTTATTTGATAGCGCGCATGAATCACGACCGAATTAATGTGAATGCCGGTTATTTGGCGTATATCACGCTACTTTCGA
TTGTTCCTATGCTCACCGTTCTCTTATCCATTTTGTCGAAGTTTTCCGTTTTTGAGAACGTTGGTAGCGTATTGCAAAGT
TTCATTATCAATAACTTTGTACCCGCATCGGGAGACGCTGTTCATGCGGCATTGCAAGAGTTTATCGCGAACACGGGCAA
AATGACGGCGGTGGGGGCGGCGTTTCTGTTTGTGGCGGCGTTGATGCTGATTTCCAACATCGACAAGAATCTCAACTATA
TTTGGAGAGTGAAGAAGAAGCGTCGTGCGGTATTCTCGTTTTCGATGTATTGGATGGTGTTGACGCTTGGGCCGATTTTG
GTCGGAGCCAGTATTGCGGCCACCTCTTACATCACCTCACTGCGTTTACTCGATAGTGAAGCGATCTCGACCGTTTACGA
TCAGTTGCTGCGTTGGCTGCCATTTATCCTCTCTTCTTCGGCCTTCGTTGGCCTTTATTTGTTGGTGCCGAATAAGAAGG
TGCAGTTTTCTCATGCCGTCGTTGGTGCCATGATCGCAGCGGTGTTGTTTGAGCTTAGTAAAAAAGGCTTTGCAGCGTAC
ATCACGCAGTTTCCGTCGTATCAATTGATTTACGGCGCTTTAGCCGCCATTCCGATTCTTTTTGTTTGGGTGTATCTCTG
TTGGTTGATCGTTTTAATCGGTGCTGAAGTCACCGCTGCACTCGGTGAGCGGGAGCACTGGAGGCCAACTGAGGACGTGA
TACAATCGCTGCCAAATAATGACACAGAATTAGAAAAGGATACTCAACGTGATCGCTTTGATTCAGAGAGTTAG

Upstream 100 bases:

>100_bases
GAGTAGTATGCGGACTGACAACCAGTCAGGGCAAAAATCGTTAGTAGTATGGTGATTAAATAAGGCATGCTTATTTCTCA
ATGATCTATTTAAGTTACGT

Downstream 100 bases:

>100_bases
TGAAGCGGCTGTACGCGTCGATGGTGAAGTCGTTGGTCAGATAGACAAAGGACTTTTGGTGTTGCTCGGCGTAGAAAAAG
ACGACGATGAGGCCAAAGCC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MVRTMNQLFGSDKLRLPQRAQAGIAFVRYLIARMNHDRINVNAGYLAYITLLSIVPMLTVLLSILSKFSVFENVGSVLQS
FIINNFVPASGDAVHAALQEFIANTGKMTAVGAAFLFVAALMLISNIDKNLNYIWRVKKKRRAVFSFSMYWMVLTLGPIL
VGASIAATSYITSLRLLDSEAISTVYDQLLRWLPFILSSSAFVGLYLLVPNKKVQFSHAVVGAMIAAVLFELSKKGFAAY
ITQFPSYQLIYGALAAIPILFVWVYLCWLIVLIGAEVTAALGEREHWRPTEDVIQSLPNNDTELEKDTQRDRFDSES

Sequences:

>Translated_317_residues
MVRTMNQLFGSDKLRLPQRAQAGIAFVRYLIARMNHDRINVNAGYLAYITLLSIVPMLTVLLSILSKFSVFENVGSVLQS
FIINNFVPASGDAVHAALQEFIANTGKMTAVGAAFLFVAALMLISNIDKNLNYIWRVKKKRRAVFSFSMYWMVLTLGPIL
VGASIAATSYITSLRLLDSEAISTVYDQLLRWLPFILSSSAFVGLYLLVPNKKVQFSHAVVGAMIAAVLFELSKKGFAAY
ITQFPSYQLIYGALAAIPILFVWVYLCWLIVLIGAEVTAALGEREHWRPTEDVIQSLPNNDTELEKDTQRDRFDSES
>Mature_317_residues
MVRTMNQLFGSDKLRLPQRAQAGIAFVRYLIARMNHDRINVNAGYLAYITLLSIVPMLTVLLSILSKFSVFENVGSVLQS
FIINNFVPASGDAVHAALQEFIANTGKMTAVGAAFLFVAALMLISNIDKNLNYIWRVKKKRRAVFSFSMYWMVLTLGPIL
VGASIAATSYITSLRLLDSEAISTVYDQLLRWLPFILSSSAFVGLYLLVPNKKVQFSHAVVGAMIAAVLFELSKKGFAAY
ITQFPSYQLIYGALAAIPILFVWVYLCWLIVLIGAEVTAALGEREHWRPTEDVIQSLPNNDTELEKDTQRDRFDSES

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=272, Percent_Identity=50.3676470588235, Blast_Score=266, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 35377; Mature: 35377

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHCCCCCCC
>Mature Secondary Structure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CCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA