| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is gloB1
Identifier: 37678337
GI number: 37678337
Start: 160328
End: 161071
Strand: Direct
Name: gloB1
Synonym: VV0153
Alternate gene names: 37678337
Gene position: 160328-161071 (Clockwise)
Preceding gene: 37678336
Following gene: 37678338
Centisome position: 4.78
GC content: 26.88
Gene sequence:
>744_bases ATGTCTCTGAGTATAACCCATGAGAAATCATTGATTGATAATTACATCTGGATTTTATTTGATAAAAGCAAAGCTATTGT TATTGATCCTGGTGAATCTGAAAAAATAATAAACTTCTTAGATAAGAACAATTTAACTTTAGAGTTTATTTTCTTAACTC ATGGTCATTGCGATCATACAAAAGGAGTTTTTTCTTTAAAAGAGAAGTTTCCAAACGCTAGTCTGTTTGTACCAATTGGT TTAGAATTAGGTTTGGGTGAAAGTATAATTAAAGAAGGTGATGAGTTAAATTTATTAAATTCTACATTTAATGTTTTAGA GTTGCCAGGGCATACCGATAATCATATTGGAATAATGTATAAAGATAATTTGTTTTGTGGTGATGTTTTGTTTTCTGCAG GCTGTGGAAGAGTGGGAAGTAATTATAAGGATATGTATCTTTCATTGAAAAAAATAAAAAGCATGGATGACAAAACAAAA ATATATTTCTCTCATGAGTATACGCTAGATAATTTGAAATTTGCGCATTATATAGATCCAAAAAATAAAAACATAATAAA TTATATAGAAGTTTTCAAGGAAAAACCAGACACAGTGTCAGCTCCCACTACATTATTATTGGAAAAGGAAATAAATCCAT TTTTAAGGTTATCTGAAAATATTGATATTAAAAATAAAATAAACAATGAATTTGATGCTTTTGTTTACCTTAGAAAATTA AAAGACAAATTTAATTCAATTTAA
Upstream 100 bases:
>100_bases GCGGGTATAGTAATCAAAAAAATATTGTAGTATCAGATTACTACCACACTATAAAAAAATCGTTATAAAATAAAATTTTG GTTAAAAGAGTATATATCAA
Downstream 100 bases:
>100_bases AAATATAAATAAAGGATAAAAATTATGAAATTAAAAACTATTATATTAATAATTGGTTTTTTATCATCTCCTAGTATTGC TTTTGCTAATGAAAATAAAG
Product: putative hydroxyacylglutathione hydrolase
Products: NA
Alternate protein names: Glyoxalase II 1; Glx II 1
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MSLSITHEKSLIDNYIWILFDKSKAIVIDPGESEKIINFLDKNNLTLEFIFLTHGHCDHTKGVFSLKEKFPNASLFVPIG LELGLGESIIKEGDELNLLNSTFNVLELPGHTDNHIGIMYKDNLFCGDVLFSAGCGRVGSNYKDMYLSLKKIKSMDDKTK IYFSHEYTLDNLKFAHYIDPKNKNIINYIEVFKEKPDTVSAPTTLLLEKEINPFLRLSENIDIKNKINNEFDAFVYLRKL KDKFNSI
Sequences:
>Translated_247_residues MSLSITHEKSLIDNYIWILFDKSKAIVIDPGESEKIINFLDKNNLTLEFIFLTHGHCDHTKGVFSLKEKFPNASLFVPIG LELGLGESIIKEGDELNLLNSTFNVLELPGHTDNHIGIMYKDNLFCGDVLFSAGCGRVGSNYKDMYLSLKKIKSMDDKTK IYFSHEYTLDNLKFAHYIDPKNKNIINYIEVFKEKPDTVSAPTTLLLEKEINPFLRLSENIDIKNKINNEFDAFVYLRKL KDKFNSI >Mature_246_residues SLSITHEKSLIDNYIWILFDKSKAIVIDPGESEKIINFLDKNNLTLEFIFLTHGHCDHTKGVFSLKEKFPNASLFVPIGL ELGLGESIIKEGDELNLLNSTFNVLELPGHTDNHIGIMYKDNLFCGDVLFSAGCGRVGSNYKDMYLSLKKIKSMDDKTKI YFSHEYTLDNLKFAHYIDPKNKNIINYIEVFKEKPDTVSAPTTLLLEKEINPFLRLSENIDIKNKINNEFDAFVYLRKLK DKFNSI
Specific function: Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family
Homologues:
Organism=Homo sapiens, GI14150041, Length=228, Percent_Identity=28.9473684210526, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI94538322, Length=262, Percent_Identity=29.0076335877863, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI94538320, Length=262, Percent_Identity=29.0076335877863, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI116642887, Length=220, Percent_Identity=29.5454545454545, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI21703352, Length=220, Percent_Identity=29.5454545454545, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI46361987, Length=202, Percent_Identity=27.7227722772277, Blast_Score=95, Evalue=7e-20, Organism=Escherichia coli, GI1786406, Length=242, Percent_Identity=40.9090909090909, Blast_Score=163, Evalue=1e-41, Organism=Caenorhabditis elegans, GI17536925, Length=258, Percent_Identity=30.2325581395349, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6320478, Length=259, Percent_Identity=31.2741312741313, Blast_Score=90, Evalue=4e-19, Organism=Drosophila melanogaster, GI21356335, Length=257, Percent_Identity=32.295719844358, Blast_Score=114, Evalue=8e-26, Organism=Drosophila melanogaster, GI24667703, Length=257, Percent_Identity=32.295719844358, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24667711, Length=257, Percent_Identity=31.9066147859922, Blast_Score=113, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLO21_VIBVY (Q7MQ55)
Other databases:
- EMBL: BA000037 - RefSeq: NP_932946.1 - HSSP: Q9SID3 - ProteinModelPortal: Q7MQ55 - SMR: Q7MQ55 - STRING: Q7MQ55 - GeneID: 2622912 - GenomeReviews: BA000037_GR - KEGG: vvy:VV0153 - NMPDR: fig|196600.1.peg.222 - eggNOG: COG0491 - HOGENOM: HBG753931 - OMA: YAGHDYV - BioCyc: VVUL196600:VV0153-MONOMER - HAMAP: MF_01374 - InterPro: IPR001279 - InterPro: IPR017782 - SMART: SM00849 - TIGRFAMs: TIGR03413
Pfam domain/function: PF00753 Lactamase_B
EC number: =3.1.2.6
Molecular weight: Translated: 28352; Mature: 28221
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSITHEKSLIDNYIWILFDKSKAIVIDPGESEKIINFLDKNNLTLEFIFLTHGHCDHT CCEECCCHHHHHCCEEEEEEECCCEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCC KGVFSLKEKFPNASLFVPIGLELGLGESIIKEGDELNLLNSTFNVLELPGHTDNHIGIMY CCHHHHHHHCCCCEEEEEECEEECCCHHHHHCCCCEEEECCCCCEEECCCCCCCEEEEEE KDNLFCGDVLFSAGCGRVGSNYKDMYLSLKKIKSMDDKTKIYFSHEYTLDNLKFAHYIDP ECCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECC KNKNIINYIEVFKEKPDTVSAPTTLLLEKEINPFLRLSENIDIKNKINNEFDAFVYLRKL CCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHCCCHHHHHHHHHHH KDKFNSI HHHHCCC >Mature Secondary Structure SLSITHEKSLIDNYIWILFDKSKAIVIDPGESEKIINFLDKNNLTLEFIFLTHGHCDHT CEECCCHHHHHCCEEEEEEECCCEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCC KGVFSLKEKFPNASLFVPIGLELGLGESIIKEGDELNLLNSTFNVLELPGHTDNHIGIMY CCHHHHHHHCCCCEEEEEECEEECCCHHHHHCCCCEEEECCCCCEEECCCCCCCEEEEEE KDNLFCGDVLFSAGCGRVGSNYKDMYLSLKKIKSMDDKTKIYFSHEYTLDNLKFAHYIDP ECCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECC KNKNIINYIEVFKEKPDTVSAPTTLLLEKEINPFLRLSENIDIKNKINNEFDAFVYLRKL CCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHCCCHHHHHHHHHHH KDKFNSI HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA