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The map label for this gene is rfbB [C]

Identifier: 37523342

GI number: 37523342

Start: 3980591

End: 3981526

Strand: Reverse

Name: rfbB [C]

Synonym: gvip510

Alternate gene names: 37523342

Gene position: 3981526-3980591 (Counterclockwise)

Preceding gene: 37523360

Following gene: 37523341

Centisome position: 85.46

GC content: 60.79

Gene sequence:

>936_bases
ATGCGTGTTCTGATTACAGGGGGGGCAGGGTTTATCGGATCGCACCTGTGCGATCGGTTGGTCAAAGCCGGAGACGAAGT
AATTTGTCTGGACAATTATTTTACCGGGGCGCGCACCAACATCGCCCACCTGCGCGATTGCGCCAATTTCGAATTTATCC
GCCACGACGTTACCGAACCGATTCGCCTGGAGGTGGACCGGGTGTACCATCTGGCCTGTCCGGCTTCTCCGATCCACTAC
CAGTACAACCCGGTCAAGACGGTCAAGACCAGCGTGCTGGGAACCCTTAACATGCTGGGCCTCGCCAAGCGGGTCAAGGC
GCGCATTTTGCTCGCTTCGACCTCCGAAGTTTACGGCGACCCGCTGGTGCACCCGCAGAACGAAGATTATTGGGGAAATG
TCAACCCCGTGGGCATCCGCAGCTGCTACGACGAGTCGAAGCGCCTCGCGGAGACCCTGATGATGGATTATCACCGCCAG
AACCACGTCGACATCCGGATTATCCGCATCTTCAACACCTACGGCCCCCGCATGAACGAGGGGGACGGGCGGGTGGTCAG
CAACTTTTTGTTCCAGGCGCTGCGCGGCGAGGCGCTTACTATCTATGGCGAAGGCAAACAGACCCGCAGCTTTTGCTACA
TCGACGATCTGGTGGAGGGGATGATCCGCCTGATGGACAGCAACTATATCGGCCCGATGAACGTCGGCAATCCGGACGAA
TTTACGATTCTGGAACTGGCCAATCAGGTGCGCTCCCTGGTCGACCCGCAACTGCCGGTGCTCTTCAACCCGCTACCGTC
GGACGACCCGCGCCAGCGCTGCCCCGACATCGGCCGGGCGCGGCGGATTTTGGGCTGGCAGCCGACGGTGGCCCTGGGCG
AGGGGCTCGCGCGCACAGCGGCGGATTTTCGCGCCCGGCTGATGCAGCATGCGTGA

Upstream 100 bases:

>100_bases
CAGACGCCGCCCACACCCACCAGGTTCACCGGTGGGGAAAAATCGGCAGAAGGCCGCTACCGATGAGCTAGCATGACGTG
CGATGCCAGGGAAGATGCCA

Downstream 100 bases:

>100_bases
ACCGGTGCCCCCGGCCTTTGAGCATTTGAGCCTGGCGGAGCGCATCTTTGCCACGCTGGCGCTGATCGAGCGCCGGGGCT
TCTGCGTCGAGTTGGGCTGC

Product: dTDP-glucose 4-6-dehydratase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRVLITGGAGFIGSHLCDRLVKAGDEVICLDNYFTGARTNIAHLRDCANFEFIRHDVTEPIRLEVDRVYHLACPASPIHY
QYNPVKTVKTSVLGTLNMLGLAKRVKARILLASTSEVYGDPLVHPQNEDYWGNVNPVGIRSCYDESKRLAETLMMDYHRQ
NHVDIRIIRIFNTYGPRMNEGDGRVVSNFLFQALRGEALTIYGEGKQTRSFCYIDDLVEGMIRLMDSNYIGPMNVGNPDE
FTILELANQVRSLVDPQLPVLFNPLPSDDPRQRCPDIGRARRILGWQPTVALGEGLARTAADFRARLMQHA

Sequences:

>Translated_311_residues
MRVLITGGAGFIGSHLCDRLVKAGDEVICLDNYFTGARTNIAHLRDCANFEFIRHDVTEPIRLEVDRVYHLACPASPIHY
QYNPVKTVKTSVLGTLNMLGLAKRVKARILLASTSEVYGDPLVHPQNEDYWGNVNPVGIRSCYDESKRLAETLMMDYHRQ
NHVDIRIIRIFNTYGPRMNEGDGRVVSNFLFQALRGEALTIYGEGKQTRSFCYIDDLVEGMIRLMDSNYIGPMNVGNPDE
FTILELANQVRSLVDPQLPVLFNPLPSDDPRQRCPDIGRARRILGWQPTVALGEGLARTAADFRARLMQHA
>Mature_311_residues
MRVLITGGAGFIGSHLCDRLVKAGDEVICLDNYFTGARTNIAHLRDCANFEFIRHDVTEPIRLEVDRVYHLACPASPIHY
QYNPVKTVKTSVLGTLNMLGLAKRVKARILLASTSEVYGDPLVHPQNEDYWGNVNPVGIRSCYDESKRLAETLMMDYHRQ
NHVDIRIIRIFNTYGPRMNEGDGRVVSNFLFQALRGEALTIYGEGKQTRSFCYIDDLVEGMIRLMDSNYIGPMNVGNPDE
FTILELANQVRSLVDPQLPVLFNPLPSDDPRQRCPDIGRARRILGWQPTVALGEGLARTAADFRARLMQHA

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI42516563, Length=310, Percent_Identity=58.3870967741935, Blast_Score=393, Evalue=1e-109,
Organism=Homo sapiens, GI7657641, Length=329, Percent_Identity=27.0516717325228, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI4507709, Length=296, Percent_Identity=25.6756756756757, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI1788589, Length=343, Percent_Identity=29.1545189504373, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI48994969, Length=339, Percent_Identity=25.3687315634218, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788353, Length=334, Percent_Identity=25.1497005988024, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786974, Length=340, Percent_Identity=26.1764705882353, Blast_Score=87, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17539532, Length=307, Percent_Identity=59.2833876221498, Blast_Score=383, Evalue=1e-107,
Organism=Caenorhabditis elegans, GI115532424, Length=323, Percent_Identity=27.8637770897833, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17568069, Length=333, Percent_Identity=27.9279279279279, Blast_Score=94, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6319493, Length=324, Percent_Identity=23.7654320987654, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356223, Length=306, Percent_Identity=58.8235294117647, Blast_Score=387, Evalue=1e-108,
Organism=Drosophila melanogaster, GI19923002, Length=324, Percent_Identity=24.6913580246914, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 35076; Mature: 35076

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLITGGAGFIGSHLCDRLVKAGDEVICLDNYFTGARTNIAHLRDCANFEFIRHDVTEP
CEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCHHHHHHCCCCC
IRLEVDRVYHLACPASPIHYQYNPVKTVKTSVLGTLNMLGLAKRVKARILLASTSEVYGD
CEEEHHHEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCCC
PLVHPQNEDYWGNVNPVGIRSCYDESKRLAETLMMDYHRQNHVDIRIIRIFNTYGPRMNE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
GDGRVVSNFLFQALRGEALTIYGEGKQTRSFCYIDDLVEGMIRLMDSNYIGPMNVGNPDE
CCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCC
FTILELANQVRSLVDPQLPVLFNPLPSDDPRQRCPDIGRARRILGWQPTVALGEGLARTA
HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
ADFRARLMQHA
HHHHHHHHHCC
>Mature Secondary Structure
MRVLITGGAGFIGSHLCDRLVKAGDEVICLDNYFTGARTNIAHLRDCANFEFIRHDVTEP
CEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCHHHHHHCCCCC
IRLEVDRVYHLACPASPIHYQYNPVKTVKTSVLGTLNMLGLAKRVKARILLASTSEVYGD
CEEEHHHEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCCC
PLVHPQNEDYWGNVNPVGIRSCYDESKRLAETLMMDYHRQNHVDIRIIRIFNTYGPRMNE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
GDGRVVSNFLFQALRGEALTIYGEGKQTRSFCYIDDLVEGMIRLMDSNYIGPMNVGNPDE
CCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCC
FTILELANQVRSLVDPQLPVLFNPLPSDDPRQRCPDIGRARRILGWQPTVALGEGLARTA
HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
ADFRARLMQHA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]