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The map label for this gene is ycdC [C]

Identifier: 37523205

GI number: 37523205

Start: 3832973

End: 3833608

Strand: Reverse

Name: ycdC [C]

Synonym: gll3636

Alternate gene names: 37523205

Gene position: 3833608-3832973 (Counterclockwise)

Preceding gene: 37523208

Following gene: 37523204

Centisome position: 82.28

GC content: 57.86

Gene sequence:

>636_bases
ATGAATTCAACCCCAGAACCGGTCTCCGACAAATCCTGCAGTAACTCCGCCCAGCGCATTTTAGAGACGGCGGAGTACTT
TTTTGCCCGGTTGGGGTTCATGGGCACGCGCGTCGACGAGATCGCCCGCGTCGCCCACATCAACAAGCGCATGATCTACT
ATCACTACGGCAGCAAAGAAGGGCTTTACCAGGCGGTGCTCGAAAAACACCTCAAGCCGATGATCGAGATGAGCCGCCAC
GTGCTGCAAACGGACCTGCCCCCCGCCGCGATGCTGGAGCGGCTGCTCAACACCTACTTTGATTTTCTGGCCACCCACCG
CGTCTACGTGCGGCTGATCAGCTGGGAGGTGCTCGGAGAGGGCAATCAGCTGAGCAACCTCGGTTTTCGCCGCCAGACTT
TTGAGCAGGTGGTTCATTATTTCGAGGTGGCCCAGAGGCAGGGTAAGCTGCGTCCTGACTGCGATGTGAGCCGCACGCTG
ATGGCGGGGATGCTGCTGTGCTACTCGTACTTCTCCCAGATGCAATACATGCAGAGTTTTTACTCGGAAATCCTCGACGA
CCCCGAACAATACGAACACTGGAAGCGTTCGGTGTTGGCGATGCTTTTGCGCTCCTGCGGCCTCGAACCCGCCTGA

Upstream 100 bases:

>100_bases
GGCCGCCGGGCGGCTATGCCGTACGATAGACTCCCGGGTATGCAAAACTGTTGGCAATTGCTTTTGATGTACCTGGACCG
CCAGAACAATGCTCACCACA

Downstream 100 bases:

>100_bases
AGCGCCAAATCCTTCCCGGTGTGGCATCGTTGAATCTATGATCCTGCTTACCGGCGCCACCGGTTTTATCGGTTCACACA
CCGCCCGAACGCTGCGCGAG

Product: TetR family transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator TetR/ArcR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; TetR Family Regulatory Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MNSTPEPVSDKSCSNSAQRILETAEYFFARLGFMGTRVDEIARVAHINKRMIYYHYGSKEGLYQAVLEKHLKPMIEMSRH
VLQTDLPPAAMLERLLNTYFDFLATHRVYVRLISWEVLGEGNQLSNLGFRRQTFEQVVHYFEVAQRQGKLRPDCDVSRTL
MAGMLLCYSYFSQMQYMQSFYSEILDDPEQYEHWKRSVLAMLLRSCGLEPA

Sequences:

>Translated_211_residues
MNSTPEPVSDKSCSNSAQRILETAEYFFARLGFMGTRVDEIARVAHINKRMIYYHYGSKEGLYQAVLEKHLKPMIEMSRH
VLQTDLPPAAMLERLLNTYFDFLATHRVYVRLISWEVLGEGNQLSNLGFRRQTFEQVVHYFEVAQRQGKLRPDCDVSRTL
MAGMLLCYSYFSQMQYMQSFYSEILDDPEQYEHWKRSVLAMLLRSCGLEPA
>Mature_211_residues
MNSTPEPVSDKSCSNSAQRILETAEYFFARLGFMGTRVDEIARVAHINKRMIYYHYGSKEGLYQAVLEKHLKPMIEMSRH
VLQTDLPPAAMLERLLNTYFDFLATHRVYVRLISWEVLGEGNQLSNLGFRRQTFEQVVHYFEVAQRQGKLRPDCDVSRTL
MAGMLLCYSYFSQMQYMQSFYSEILDDPEQYEHWKRSVLAMLLRSCGLEPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24675; Mature: 24675

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSTPEPVSDKSCSNSAQRILETAEYFFARLGFMGTRVDEIARVAHINKRMIYYHYGSKE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCC
GLYQAVLEKHLKPMIEMSRHVLQTDLPPAAMLERLLNTYFDFLATHRVYVRLISWEVLGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNQLSNLGFRRQTFEQVVHYFEVAQRQGKLRPDCDVSRTLMAGMLLCYSYFSQMQYMQSF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YSEILDDPEQYEHWKRSVLAMLLRSCGLEPA
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNSTPEPVSDKSCSNSAQRILETAEYFFARLGFMGTRVDEIARVAHINKRMIYYHYGSKE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCC
GLYQAVLEKHLKPMIEMSRHVLQTDLPPAAMLERLLNTYFDFLATHRVYVRLISWEVLGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNQLSNLGFRRQTFEQVVHYFEVAQRQGKLRPDCDVSRTLMAGMLLCYSYFSQMQYMQSF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YSEILDDPEQYEHWKRSVLAMLLRSCGLEPA
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA