| Definition | Gloeobacter violaceus PCC 7421 chromosome, complete genome. |
|---|---|
| Accession | NC_005125 |
| Length | 4,659,019 |
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The map label for this gene is yfmF [H]
Identifier: 37523171
GI number: 37523171
Start: 3797311
End: 3798090
Strand: Reverse
Name: yfmF [H]
Synonym: gll3602
Alternate gene names: 37523171
Gene position: 3798090-3797311 (Counterclockwise)
Preceding gene: 37523175
Following gene: 37523170
Centisome position: 81.52
GC content: 67.44
Gene sequence:
>780_bases ATGGCCGAAGCACCTCAAGTGATGGAAACGCTTGCACAGGCACCCTTGCAGATGGCAGACGGCGGCAATGTGCACCTGCA CGTCCTGCCGGGGGAATGGCTGGGACTGATTGGGGCAAGCGGGGCGGGCAAATCGACGATGTTGCGGTTGCTGGCCCGGC TGTTGGCCCCCTTCGGCGGGGTGGTGCGCCTGGATGGCCGGCTGTTGCAGTCGGGCGGCATTTTGGAGGCCGCCCAGGCG CTCGGGCTGATTCCCTGCGGCCTGGCACCCACGGGCCTCACGGTGTGGGAGACGGCGGCGCTGGCGCGGGCCGGTTCGCG CGGCTGCCGGTTGGGGGCCGAAGATCGCAAAGCGGTGGATTGGGCGCTGGCGCGCGCCGGGGTGGGTGATCTGGCCGACC GGTTGGCCGAGCCGCTGCTTGGCGCTGCCCGCCAGCGGCTTTTTTTGGCCCTGGCCCTGCTGCAAAGTCCGCGGGTGCTG CTGCTCGACGATCCGACCATCGCCCTCGATGCGCGCGAGCAACTGGCGCTGTTGGAGTTGCTCGCCGATCTCAAGCGCAC CGAGAATCTGGCGGTCGTGACCGTCTTTGATGATCTCAATCTGGCGGCGCGCTTTTGTGAGCGTCTGCTGCTGCTCAGTG ACGGCCGGCCGGTGGCCGGCGGCACTCCCGGACAGGTGCTCGCAGCACCGCTGTTGGAGCGGGCGATGGGGGTCGAGTTC TATCGGTTCGAGACGCCCTTCGGCCTGCAGGTCTTTCCTATTCGGATTCTTTCGGAGTAA
Upstream 100 bases:
>100_bases CAGCCTGTCCATAGGGTTGGTCGTTGCGGGGGCAATTGCTTTGGGTTTTCCCATGCCCGTGGGTCTCGTCTCCAGTTCTG TTAGTGAAGTTTCTCAATAG
Downstream 100 bases:
>100_bases TTGCGCCCATGCATGGTTTATTCCGCCCGCACTTTGCGGGACGGTGGAACGCGGCTGCGTTCGCCTGGTGCCTTGTTTGT GTCCCAGTTGCCCCGGCTGC
Product: ABC transporter ATP-binding protein
Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]
Alternate protein names: Ferric-citrate import ATP-binding protein [H]
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MAEAPQVMETLAQAPLQMADGGNVHLHVLPGEWLGLIGASGAGKSTMLRLLARLLAPFGGVVRLDGRLLQSGGILEAAQA LGLIPCGLAPTGLTVWETAALARAGSRGCRLGAEDRKAVDWALARAGVGDLADRLAEPLLGAARQRLFLALALLQSPRVL LLDDPTIALDAREQLALLELLADLKRTENLAVVTVFDDLNLAARFCERLLLLSDGRPVAGGTPGQVLAAPLLERAMGVEF YRFETPFGLQVFPIRILSE
Sequences:
>Translated_259_residues MAEAPQVMETLAQAPLQMADGGNVHLHVLPGEWLGLIGASGAGKSTMLRLLARLLAPFGGVVRLDGRLLQSGGILEAAQA LGLIPCGLAPTGLTVWETAALARAGSRGCRLGAEDRKAVDWALARAGVGDLADRLAEPLLGAARQRLFLALALLQSPRVL LLDDPTIALDAREQLALLELLADLKRTENLAVVTVFDDLNLAARFCERLLLLSDGRPVAGGTPGQVLAAPLLERAMGVEF YRFETPFGLQVFPIRILSE >Mature_258_residues AEAPQVMETLAQAPLQMADGGNVHLHVLPGEWLGLIGASGAGKSTMLRLLARLLAPFGGVVRLDGRLLQSGGILEAAQAL GLIPCGLAPTGLTVWETAALARAGSRGCRLGAEDRKAVDWALARAGVGDLADRLAEPLLGAARQRLFLALALLQSPRVLL LDDPTIALDAREQLALLELLADLKRTENLAVVTVFDDLNLAARFCERLLLLSDGRPVAGGTPGQVLAAPLLERAMGVEFY RFETPFGLQVFPIRILSE
Specific function: Part of the ABC transporter complex YfmCDEF involved in citrate-dependent Fe(3+) import. Responsible for energy coupling to the transport system (Probable) [H]
COG id: COG1120
COG function: function code PH; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=192, Percent_Identity=31.25, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI45446740, Length=192, Percent_Identity=31.25, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI11967969, Length=238, Percent_Identity=28.9915966386555, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI9955963, Length=217, Percent_Identity=29.4930875576037, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI105990541, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI9665248, Length=213, Percent_Identity=30.9859154929577, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI156105685, Length=205, Percent_Identity=30.2439024390244, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27477115, Length=197, Percent_Identity=29.9492385786802, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=36.4035087719298, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1786345, Length=221, Percent_Identity=38.0090497737557, Blast_Score=137, Evalue=6e-34, Organism=Escherichia coli, GI1790739, Length=221, Percent_Identity=38.4615384615385, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1786398, Length=234, Percent_Identity=30.3418803418803, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789864, Length=229, Percent_Identity=28.82096069869, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789032, Length=221, Percent_Identity=32.1266968325792, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=29.6137339055794, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1788450, Length=217, Percent_Identity=31.3364055299539, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788165, Length=209, Percent_Identity=31.5789473684211, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI87081834, Length=203, Percent_Identity=35.9605911330049, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI145693107, Length=229, Percent_Identity=30.1310043668122, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789963, Length=237, Percent_Identity=28.6919831223629, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=28.110599078341, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87081709, Length=217, Percent_Identity=27.6497695852535, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787370, Length=214, Percent_Identity=30.3738317757009, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787758, Length=211, Percent_Identity=32.2274881516588, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1788506, Length=218, Percent_Identity=28.4403669724771, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI48994883, Length=224, Percent_Identity=29.9107142857143, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081782, Length=211, Percent_Identity=31.2796208530806, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48994997, Length=217, Percent_Identity=30.8755760368664, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786703, Length=226, Percent_Identity=33.6283185840708, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=32.6923076923077, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1790525, Length=242, Percent_Identity=28.5123966942149, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48994943, Length=209, Percent_Identity=27.7511961722488, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI87081791, Length=218, Percent_Identity=31.651376146789, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790162, Length=221, Percent_Identity=27.1493212669683, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788002, Length=227, Percent_Identity=33.4801762114537, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786253, Length=215, Percent_Identity=29.3023255813954, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787500, Length=226, Percent_Identity=26.9911504424779, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=26.9058295964126, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787089, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787112, Length=206, Percent_Identity=29.6116504854369, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=25.3588516746411, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790467, Length=217, Percent_Identity=23.0414746543779, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17558664, Length=216, Percent_Identity=25.462962962963, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115533592, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI25146777, Length=208, Percent_Identity=24.0384615384615, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17541710, Length=221, Percent_Identity=30.316742081448, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193209708, Length=211, Percent_Identity=25.5924170616114, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115535101, Length=208, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17567265, Length=158, Percent_Identity=32.9113924050633, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=215, Percent_Identity=25.5813953488372, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI281363262, Length=158, Percent_Identity=31.0126582278481, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24653245, Length=158, Percent_Identity=31.0126582278481, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 27434; Mature: 27302
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEAPQVMETLAQAPLQMADGGNVHLHVLPGEWLGLIGASGAGKSTMLRLLARLLAPFGG CCCCHHHHHHHHHCCCEECCCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCCC VVRLDGRLLQSGGILEAAQALGLIPCGLAPTGLTVWETAALARAGSRGCRLGAEDRKAVD EEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH WALARAGVGDLADRLAEPLLGAARQRLFLALALLQSPRVLLLDDPTIALDAREQLALLEL HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCHHHHHHHHH LADLKRTENLAVVTVFDDLNLAARFCERLLLLSDGRPVAGGTPGQVLAAPLLERAMGVEF HHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEE YRFETPFGLQVFPIRILSE EEECCCCCCEEEEEEEECC >Mature Secondary Structure AEAPQVMETLAQAPLQMADGGNVHLHVLPGEWLGLIGASGAGKSTMLRLLARLLAPFGG CCCHHHHHHHHHCCCEECCCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCCC VVRLDGRLLQSGGILEAAQALGLIPCGLAPTGLTVWETAALARAGSRGCRLGAEDRKAVD EEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH WALARAGVGDLADRLAEPLLGAARQRLFLALALLQSPRVLLLDDPTIALDAREQLALLEL HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCHHHHHHHHH LADLKRTENLAVVTVFDDLNLAARFCERLLLLSDGRPVAGGTPGQVLAAPLLERAMGVEF HHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEE YRFETPFGLQVFPIRILSE EEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]
Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377 [H]