| Definition | Gloeobacter violaceus PCC 7421 chromosome, complete genome. |
|---|---|
| Accession | NC_005125 |
| Length | 4,659,019 |
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The map label for this gene is speA [H]
Identifier: 37523056
GI number: 37523056
Start: 3697533
End: 3698936
Strand: Reverse
Name: speA [H]
Synonym: gll3487
Alternate gene names: 37523056
Gene position: 3698936-3697533 (Counterclockwise)
Preceding gene: 37523059
Following gene: 37523055
Centisome position: 79.39
GC content: 67.88
Gene sequence:
>1404_bases GTGGAAACCACTCCGCTCTGGGATGCGCTGAGGGCCGTCGCTCTAGCCTCGGGCACGGGCTTTCACACCCCGGGCCACAA CGGCGGGGCGGGCCTGCCGCCAGCCCTCAAACACTGGCCGGATTGGGGCCGTCTGGACCTGACCGAACTTGCAGGACTCG ACAACCTGCACGCTCCCACCGGGGTGATCGCCCACGCGCAACGGCTCGCGGCGGCAGTTTGGGGAGCCGAGCGCAGTTGG TTTCTGGTCAACGGTGCGACCGCCGGAATCCAGGCGATGCTGCTTGCGGCACTCGGGCAGGGGCAGAAGGTGCTCGTGCC CAGAAACTGTCACCAAAGTATCGTGCACGCCCTGGTGCTGAGCGGCGCGGTGCCGGTGTTCGTCCAACCTGTATGGGACA GGCGCTGGCAGTTGGCCCACGGACTGACGGCGACGACGGTGGAAGCCGCCCTGGCCGTCCACCCGGACATCCGGGCGGTG GTGGCGGTGCACCCGACGTACTTCGGGGCGGTGGGCGAGACGCGGGCCATCGCCAGGGTCGCCCACGCAAAAGGGATTGC GCTGTTGGTCGATGCCGCCCACGGCGCCCATCTGCGCTTCCATCCGGACTTGCCCGAGTGCGCACTCGCAGCGGGAGCGG ACTTGGTCGTCCATTCCGCCCACAAGACACTGCCCGCCCTCACCCAGGCGGCACTCCTTCACCAGCAGGGCACCCTGGTG GACCCGGCCAGGGTGGAGATGGCTCTGAACCTTCTGCAAACCACCAGCCCGAGCTACTTGCTGATGGCCTCGCTCGATCT GGCCCGCGCCCACATGGTCCGCCACGGCCGCGAGCAGCTCGGGCACATCCTGGAGATGGCCCATAGACTGCGACACAAAC TGCCCTTCGCGGTGCTCGGGGGCGACGGAACGCCTGGCTTCGATCCGACCCGCCTGGTCATCGACGTGGGTGAGAAAGGC TGGAGCGGTCACGCCGCTGAGACCTGGCTGGAGCAAAACGCCCAGGTGCGTGCGGAGATGGCCACCCACCGCCACCTGGT CTTCATCCTCAATAGCGCCCACACCGAATTCGACGGCGAGCAACTGCAAGCATCCCTTCTGGCCCTGGCAACGGCCCAAC CGACCGGGGCAACGCCGCCGGATCTGCTTCCACCGCCGCTTCCGGAGCTGCGCTATTCACCCCGCGAAGCTTTCGGCCGC TCCCACCGGAGCGTTCCCCTAGCCGCGGCAGCCGGACTGACCAGTGCGGCCGATGTCTGCACCTACCCGCCCGGAGTGCC GGTGCTGCTGCCGGGGGAAGTGGTTGCCGCCCAGAGCGTCGAGTATTTGGGCGCCGCCATTGACACTGGGGCCGAGACAG TCGGGATCGACGGGCGCGGACACATCCGGGTCACTATTGACTAA
Upstream 100 bases:
>100_bases TCATGCCATCAAAAAAGTGGGCCTCGAACCCACTCCTCCAGTCCCTGTGTGCTGAGGATACTAAGTATAGTGTGCCACAC ACAACAAGACCAAGGAAGCC
Downstream 100 bases:
>100_bases ATCCTAATTTAGACTTAGTCTAAATACAGGATCCACAGAATCTGAGGGGGCCGATGGCCAGACGATTCCTCGGGCTGTTT CCCCGAGTGCCCAGCGAGCC
Product: lysine decarboxylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues METTPLWDALRAVALASGTGFHTPGHNGGAGLPPALKHWPDWGRLDLTELAGLDNLHAPTGVIAHAQRLAAAVWGAERSW FLVNGATAGIQAMLLAALGQGQKVLVPRNCHQSIVHALVLSGAVPVFVQPVWDRRWQLAHGLTATTVEAALAVHPDIRAV VAVHPTYFGAVGETRAIARVAHAKGIALLVDAAHGAHLRFHPDLPECALAAGADLVVHSAHKTLPALTQAALLHQQGTLV DPARVEMALNLLQTTSPSYLLMASLDLARAHMVRHGREQLGHILEMAHRLRHKLPFAVLGGDGTPGFDPTRLVIDVGEKG WSGHAAETWLEQNAQVRAEMATHRHLVFILNSAHTEFDGEQLQASLLALATAQPTGATPPDLLPPPLPELRYSPREAFGR SHRSVPLAAAAGLTSAADVCTYPPGVPVLLPGEVVAAQSVEYLGAAIDTGAETVGIDGRGHIRVTID
Sequences:
>Translated_467_residues METTPLWDALRAVALASGTGFHTPGHNGGAGLPPALKHWPDWGRLDLTELAGLDNLHAPTGVIAHAQRLAAAVWGAERSW FLVNGATAGIQAMLLAALGQGQKVLVPRNCHQSIVHALVLSGAVPVFVQPVWDRRWQLAHGLTATTVEAALAVHPDIRAV VAVHPTYFGAVGETRAIARVAHAKGIALLVDAAHGAHLRFHPDLPECALAAGADLVVHSAHKTLPALTQAALLHQQGTLV DPARVEMALNLLQTTSPSYLLMASLDLARAHMVRHGREQLGHILEMAHRLRHKLPFAVLGGDGTPGFDPTRLVIDVGEKG WSGHAAETWLEQNAQVRAEMATHRHLVFILNSAHTEFDGEQLQASLLALATAQPTGATPPDLLPPPLPELRYSPREAFGR SHRSVPLAAAAGLTSAADVCTYPPGVPVLLPGEVVAAQSVEYLGAAIDTGAETVGIDGRGHIRVTID >Mature_467_residues METTPLWDALRAVALASGTGFHTPGHNGGAGLPPALKHWPDWGRLDLTELAGLDNLHAPTGVIAHAQRLAAAVWGAERSW FLVNGATAGIQAMLLAALGQGQKVLVPRNCHQSIVHALVLSGAVPVFVQPVWDRRWQLAHGLTATTVEAALAVHPDIRAV VAVHPTYFGAVGETRAIARVAHAKGIALLVDAAHGAHLRFHPDLPECALAAGADLVVHSAHKTLPALTQAALLHQQGTLV DPARVEMALNLLQTTSPSYLLMASLDLARAHMVRHGREQLGHILEMAHRLRHKLPFAVLGGDGTPGFDPTRLVIDVGEKG WSGHAAETWLEQNAQVRAEMATHRHLVFILNSAHTEFDGEQLQASLLALATAQPTGATPPDLLPPPLPELRYSPREAFGR SHRSVPLAAAAGLTSAADVCTYPPGVPVLLPGEVVAAQSVEYLGAAIDTGAETVGIDGRGHIRVTID
Specific function: Catalyzes the formation of agmatine from arginine [H]
COG id: COG1982
COG function: function code E; Arginine/lysine/ornithine decarboxylases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]
Homologues:
Organism=Escherichia coli, GI221142684, Length=338, Percent_Identity=26.6272189349112, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1790573, Length=322, Percent_Identity=25.1552795031056, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1786384, Length=328, Percent_Identity=27.4390243902439, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI1786909, Length=311, Percent_Identity=26.6881028938907, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000310 - InterPro: IPR008286 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C [H]
EC number: =4.1.1.19 [H]
Molecular weight: Translated: 49370; Mature: 49370
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METTPLWDALRAVALASGTGFHTPGHNGGAGLPPALKHWPDWGRLDLTELAGLDNLHAPT CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCH GVIAHAQRLAAAVWGAERSWFLVNGATAGIQAMLLAALGQGQKVLVPRNCHQSIVHALVL HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH SGAVPVFVQPVWDRRWQLAHGLTATTVEAALAVHPDIRAVVAVHPTYFGAVGETRAIARV HCCCCEEEECHHHHHHHHHCCCHHHHHHHHHEECCCCEEEEEECCHHHCCCCCHHHHHHH AHAKGIALLVDAAHGAHLRFHPDLPECALAAGADLVVHSAHKTLPALTQAALLHQQGTLV HHHCCEEEEEECCCCCEEEECCCCCHHHHHCCCHHEEECHHHHHHHHHHHHHHHCCCCCC DPARVEMALNLLQTTSPSYLLMASLDLARAHMVRHGREQLGHILEMAHRLRHKLPFAVLG CHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC GDGTPGFDPTRLVIDVGEKGWSGHAAETWLEQNAQVRAEMATHRHLVFILNSAHTEFDGE CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCHH QLQASLLALATAQPTGATPPDLLPPPLPELRYSPREAFGRSHRSVPLAAAAGLTSAADVC HHHHHHHHHEECCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCHHHHCCCCCHHHHC TYPPGVPVLLPGEVVAAQSVEYLGAAIDTGAETVGIDGRGHIRVTID CCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEC >Mature Secondary Structure METTPLWDALRAVALASGTGFHTPGHNGGAGLPPALKHWPDWGRLDLTELAGLDNLHAPT CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCH GVIAHAQRLAAAVWGAERSWFLVNGATAGIQAMLLAALGQGQKVLVPRNCHQSIVHALVL HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH SGAVPVFVQPVWDRRWQLAHGLTATTVEAALAVHPDIRAVVAVHPTYFGAVGETRAIARV HCCCCEEEECHHHHHHHHHCCCHHHHHHHHHEECCCCEEEEEECCHHHCCCCCHHHHHHH AHAKGIALLVDAAHGAHLRFHPDLPECALAAGADLVVHSAHKTLPALTQAALLHQQGTLV HHHCCEEEEEECCCCCEEEECCCCCHHHHHCCCHHEEECHHHHHHHHHHHHHHHCCCCCC DPARVEMALNLLQTTSPSYLLMASLDLARAHMVRHGREQLGHILEMAHRLRHKLPFAVLG CHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC GDGTPGFDPTRLVIDVGEKGWSGHAAETWLEQNAQVRAEMATHRHLVFILNSAHTEFDGE CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCHH QLQASLLALATAQPTGATPPDLLPPPLPELRYSPREAFGRSHRSVPLAAAAGLTSAADVC HHHHHHHHHEECCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCHHHHCCCCCHHHHC TYPPGVPVLLPGEVVAAQSVEYLGAAIDTGAETVGIDGRGHIRVTID CCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969500; 9384377; 1697575; 1936936 [H]