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The map label for this gene is ugpB [C]

Identifier: 37522768

GI number: 37522768

Start: 3404862

End: 3406124

Strand: Direct

Name: ugpB [C]

Synonym: glr3199

Alternate gene names: 37522768

Gene position: 3404862-3406124 (Clockwise)

Preceding gene: 37522767

Following gene: 37522769

Centisome position: 73.08

GC content: 62.95

Gene sequence:

>1263_bases
GTGCTGTCGAGTGCGGCGCTTGTCGCCTGCGCCGGGTCACCCGAACCTTCCGGTCCCATCGAGCTGACATTCTGGCACGG
TGCCGACCCGCCTCCCAACCGGGTGGTACTCGACAAGCTCGTGGAGCGCTTTAATTTTCAGCACCCGGATATCCGCGTGC
GTGCCATTTACGCGGGCCAGCAGGATCAGCAGATCCCCAAAATTTTGGCGGCGGTGATCGGCGGCTCGCCCCCGGATTTG
CTCTGGTACAACGCCACGCTCACCGGCCAGTTGGTCAAGGCCGACGCCGTCGTTCCCCTCGACGGCTACTTGCAAAAAGA
AAACCTGCTCGAGCGGGTCTATCCGAATTTGATCCCCGCCACCCGCTACCGGGGCAAGACCTGGTCGCTTCCTTTTGACA
CCAACAACCTGGCGGTCTTCTACAACAAAAAGATCTTTGCAAAAGCCGGGGTGCAGACTTTTCCCACCACCTGGGCCGAA
TTTCTGAGCCTCGCCGAGCGGCTCACCGTCGATCGCAATGGCGACGGCCGCCCGGAGCGCCACGGCCTGCGGCTGCCCTT
GGGCAAGGGCGAATGGACCGTTTTCAACTGGTTACCCTTTTTCTGGCAGGCTGGGGGTGAACTGCTCGTAGGCGGCCAAC
CGCAGATCGATTCGCCTGCGGGGGTACGCGCCCTCACTTACTGGCAGAGTTTGCTCGTCCGTTCCGCCGCGAGCCTCTCC
CAGCCCGAGCAGGGCTACATGTTCGACGATTTTTTTGCCGGACGGGTGGCGATGCAGGTGAGCGGTCCCTGGACCCTGGG
AGAAATTGGCGAAAACGGCATGGATTACGGCGTATTTCCCTTGCCGCGCGGCGAGGTGCGGGCCACCGCCATCGGCGGCG
AGCAGTTGTTTTTGATGAAGACGACGCCCAAGCGCGAGCAGGCCGGCTGGCACTTCGCGCGTTATATTCTCAGTGCCGAA
TTTCAGAGCGCCTGGGCCACCGGCACGGGCTACTTGCCCGTCACCCCCGAGGCGACCCGCACCCCCGCCTACCAGACGTT
TTTACAGCGCAATCCGCAACTAAAAATCTTCCTCGACCAGTTGCCTTCGGGCCGCAACCGCCCCCTCGACCCGACCTACC
CGCAAATTTCTGACGCCATTGGCCGTGCGGTCGAGCAGGTGCTTCTGGGAGCACGCACCCCCACTGCGGCCCTCAACGCC
GCCCAACGCGAAGCGGCACTGATTGTGCGCACCCAGCCAGGGGATATCGACACCGGGCCTTAG

Upstream 100 bases:

>100_bases
AGGAGGAAGTGGAGCGGCAGGCTGAATTGCTTACCGGTTGAGCGGACCGGTGCGCGCGCCAGGGAAGCTGTACGGACTGT
GGGCAAAACCGTTGTTGCTG

Downstream 100 bases:

>100_bases
AACCTGCGTGTAACGGTAAGAAAACCACCTTTGGAAAAAGCCTTGTGTCATGTGCGATAAAATGCTGTCCGTGAGCAACG
GCTGAAAAATCGTTATGTAC

Product: sugar binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MLSSAALVACAGSPEPSGPIELTFWHGADPPPNRVVLDKLVERFNFQHPDIRVRAIYAGQQDQQIPKILAAVIGGSPPDL
LWYNATLTGQLVKADAVVPLDGYLQKENLLERVYPNLIPATRYRGKTWSLPFDTNNLAVFYNKKIFAKAGVQTFPTTWAE
FLSLAERLTVDRNGDGRPERHGLRLPLGKGEWTVFNWLPFFWQAGGELLVGGQPQIDSPAGVRALTYWQSLLVRSAASLS
QPEQGYMFDDFFAGRVAMQVSGPWTLGEIGENGMDYGVFPLPRGEVRATAIGGEQLFLMKTTPKREQAGWHFARYILSAE
FQSAWATGTGYLPVTPEATRTPAYQTFLQRNPQLKIFLDQLPSGRNRPLDPTYPQISDAIGRAVEQVLLGARTPTAALNA
AQREAALIVRTQPGDIDTGP

Sequences:

>Translated_420_residues
MLSSAALVACAGSPEPSGPIELTFWHGADPPPNRVVLDKLVERFNFQHPDIRVRAIYAGQQDQQIPKILAAVIGGSPPDL
LWYNATLTGQLVKADAVVPLDGYLQKENLLERVYPNLIPATRYRGKTWSLPFDTNNLAVFYNKKIFAKAGVQTFPTTWAE
FLSLAERLTVDRNGDGRPERHGLRLPLGKGEWTVFNWLPFFWQAGGELLVGGQPQIDSPAGVRALTYWQSLLVRSAASLS
QPEQGYMFDDFFAGRVAMQVSGPWTLGEIGENGMDYGVFPLPRGEVRATAIGGEQLFLMKTTPKREQAGWHFARYILSAE
FQSAWATGTGYLPVTPEATRTPAYQTFLQRNPQLKIFLDQLPSGRNRPLDPTYPQISDAIGRAVEQVLLGARTPTAALNA
AQREAALIVRTQPGDIDTGP
>Mature_420_residues
MLSSAALVACAGSPEPSGPIELTFWHGADPPPNRVVLDKLVERFNFQHPDIRVRAIYAGQQDQQIPKILAAVIGGSPPDL
LWYNATLTGQLVKADAVVPLDGYLQKENLLERVYPNLIPATRYRGKTWSLPFDTNNLAVFYNKKIFAKAGVQTFPTTWAE
FLSLAERLTVDRNGDGRPERHGLRLPLGKGEWTVFNWLPFFWQAGGELLVGGQPQIDSPAGVRALTYWQSLLVRSAASLS
QPEQGYMFDDFFAGRVAMQVSGPWTLGEIGENGMDYGVFPLPRGEVRATAIGGEQLFLMKTTPKREQAGWHFARYILSAE
FQSAWATGTGYLPVTPEATRTPAYQTFLQRNPQLKIFLDQLPSGRNRPLDPTYPQISDAIGRAVEQVLLGARTPTAALNA
AQREAALIVRTQPGDIDTGP

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=418, Percent_Identity=23.6842105263158, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46317; Mature: 46317

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSAALVACAGSPEPSGPIELTFWHGADPPPNRVVLDKLVERFNFQHPDIRVRAIYAGQ
CCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
QDQQIPKILAAVIGGSPPDLLWYNATLTGQLVKADAVVPLDGYLQKENLLERVYPNLIPA
CCHHHHHHHHHHHCCCCCCEEEEEEEECCEEEECCEEECCCCHHHHHHHHHHHCCCCCCC
TRYRGKTWSLPFDTNNLAVFYNKKIFAKAGVQTFPTTWAEFLSLAERLTVDRNGDGRPER
CCCCCCEEECCCCCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
HGLRLPLGKGEWTVFNWLPFFWQAGGELLVGGQPQIDSPAGVRALTYWQSLLVRSAASLS
CCEEEECCCCCEEEEECHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
QPEQGYMFDDFFAGRVAMQVSGPWTLGEIGENGMDYGVFPLPRGEVRATAIGGEQLFLMK
CCCCCCEEHHCCCCEEEEEECCCEEHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE
TTPKREQAGWHFARYILSAEFQSAWATGTGYLPVTPEATRTPAYQTFLQRNPQLKIFLDQ
CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCEEEEEEC
LPSGRNRPLDPTYPQISDAIGRAVEQVLLGARTPTAALNAAQREAALIVRTQPGDIDTGP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MLSSAALVACAGSPEPSGPIELTFWHGADPPPNRVVLDKLVERFNFQHPDIRVRAIYAGQ
CCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
QDQQIPKILAAVIGGSPPDLLWYNATLTGQLVKADAVVPLDGYLQKENLLERVYPNLIPA
CCHHHHHHHHHHHCCCCCCEEEEEEEECCEEEECCEEECCCCHHHHHHHHHHHCCCCCCC
TRYRGKTWSLPFDTNNLAVFYNKKIFAKAGVQTFPTTWAEFLSLAERLTVDRNGDGRPER
CCCCCCEEECCCCCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
HGLRLPLGKGEWTVFNWLPFFWQAGGELLVGGQPQIDSPAGVRALTYWQSLLVRSAASLS
CCEEEECCCCCEEEEECHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
QPEQGYMFDDFFAGRVAMQVSGPWTLGEIGENGMDYGVFPLPRGEVRATAIGGEQLFLMK
CCCCCCEEHHCCCCEEEEEECCCEEHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE
TTPKREQAGWHFARYILSAEFQSAWATGTGYLPVTPEATRTPAYQTFLQRNPQLKIFLDQ
CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCEEEEEEC
LPSGRNRPLDPTYPQISDAIGRAVEQVLLGARTPTAALNAAQREAALIVRTQPGDIDTGP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA