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The map label for this gene is psbB [H]

Identifier: 37522568

GI number: 37522568

Start: 3198921

End: 3200531

Strand: Direct

Name: psbB [H]

Synonym: gvip409

Alternate gene names: 37522568

Gene position: 3198921-3200531 (Clockwise)

Preceding gene: 37522563

Following gene: 37522569

Centisome position: 68.66

GC content: 63.0

Gene sequence:

>1611_bases
ATGGGACTACCTTGGTATCGGGTGCACACCGTTGTCACCTCAGATCCGGGACGGTTGATTGCGGTACACCTGATGCACAC
AGCACTGGTGGCCGGTTGGGCGGGCTCGATGGCGTTTTTCGAAGCGTCTGTCTTCAACCCTGAAGATCCCGTTCTCGACC
CGATGTGGCGGCAGGGAATGTATGTCATTCCGTTTATGGCCCGCCTCGGCGTGATCAACTCCTGGTCCGGCTGGTCGGTC
TTTGGTCCTTTTACTGCCGACGGTCTGGGCAACCGGATTGACCCCAACGTCGCCAACGTCGGCTTCTGGTCGTTCGAAGG
GGTCGCCGCGGCCCACATTGTGCTCTCGGGGCTGTTATTCCTCGCGGCCTGCTGGCACTGGGTCAACTGGGATCTCGAAC
TGTTTCGCAACCCCCGCAACGGCGAACTGGGTCTGGATTTGCCCAAGATCTTCGGCATTCACCTGCTGCTCTCGGGGCTC
GCCTGCTTCGGCTTCGGTGCTGTGCACATGCAAACCATCGGCATGTGGGTCTCAGCCGACCCGATCTACGTCGAGCTGGG
CAAGTACGGCAATTTGCTGCAAGGCATGAATCCAGAAGCCCTGGGAGTCGTGGTACCGACCGGATTTGCCTGGGGTGCGG
ATGGATTCAACCCTTACAACCCGGCGGGGATCGCCGCCCACCACGTCGCCGCCGGTATCGTCGGCATCCTGGGCGGCATA
TTTCACATCGCGGTGCGACCGCCGGAGCGGCTCTACCGCGCCCTGCGCATGGGCAACATCGAGACGGTTCTGGCGAGCGC
CCTGGCGGCGGTCTTCTTTGCCGCCTTCGTGGTGGCCGGTACCTTCTGGTACGGCACCGCCACCAACCCGGTGGAGCTGT
TCGGCCCGGTGCGCTACTTCTGGGACGCCCAGGTCTACGACAAGAAAGTTAACGAGCTGGTGACCGCCAACGTGGCCAAG
GGCATGAGCCGCGCCGAGGCCGAGAACGCCGTACCGCTCCGCCTGCGGTTCTATGACTACGTCGGCAACAGCCCCGCCAA
GGGCGGTCTGTTCCGCGGCGGCCCGATGAACAACGGCGACGGTGTGGCGACCGGCTGGCTCGGTCAGCCCGTCTTCAAGG
ACAAAGAGGGCCGCGAGCTGCGGGTTGTTCACCTCAACACACTCTACGAGACCCAGCCGGTCGTCCTGGTCGACAGCAAC
AACATCCCCCGCGCCGACATTCCTTTCCAGCGCTCCGAGTCGCAGCTCAGCTTTGAGCAGACCGGTGTGACGGTGTCGTT
CGTGGGCGGCAAGCTCAACGGCCAGAGCTTCGAAGATCCGGCCCAGGTCAAGAGCTATGCCAAGCGCGCCCAGTTGGGTG
AACTCATCGAGTTCGACACCAAGGACGCCGACGGTGTCTTCCGTACCAGCACCCGCGGCTGGTTCGTTCTGGCCCACGGC
ATCTTCGCGCTGCTGTTCTTCTTCGGGCACATCTGGCACGGGGCGCGCACGCTCTTCTTGGATGTGTTCACCGGCGTCGA
CCCGACCCGCCAGGAAGAAGAATTCGAATACGGCGTGTTCAAGAAACTGGGCGACCCGACCACCCGCAGAGATGAGACCG
AGGCGGCCTAG

Upstream 100 bases:

>100_bases
GGGCAACCACAAAAGCGGACCGCGTTGGCAAAAGCAGTATAGGCACTTTGGACATCAGGATCCTGGTTGCTTCTGGAGTA
GTTAAAGGAGGACTAGATCG

Downstream 100 bases:

>100_bases
TTTAGGATGAGCGGGGGGCACACGCCCCCCCGGCCGTCGTTTTTGCCCTTGCCACGGTTACTTTCAGAGGAGCACTCTCG
ATATGGGTTCGAGCGGTATC

Product: photosystem II core light harvesting protein

Products: NA

Alternate protein names: Protein CP-47 [H]

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MGLPWYRVHTVVTSDPGRLIAVHLMHTALVAGWAGSMAFFEASVFNPEDPVLDPMWRQGMYVIPFMARLGVINSWSGWSV
FGPFTADGLGNRIDPNVANVGFWSFEGVAAAHIVLSGLLFLAACWHWVNWDLELFRNPRNGELGLDLPKIFGIHLLLSGL
ACFGFGAVHMQTIGMWVSADPIYVELGKYGNLLQGMNPEALGVVVPTGFAWGADGFNPYNPAGIAAHHVAAGIVGILGGI
FHIAVRPPERLYRALRMGNIETVLASALAAVFFAAFVVAGTFWYGTATNPVELFGPVRYFWDAQVYDKKVNELVTANVAK
GMSRAEAENAVPLRLRFYDYVGNSPAKGGLFRGGPMNNGDGVATGWLGQPVFKDKEGRELRVVHLNTLYETQPVVLVDSN
NIPRADIPFQRSESQLSFEQTGVTVSFVGGKLNGQSFEDPAQVKSYAKRAQLGELIEFDTKDADGVFRTSTRGWFVLAHG
IFALLFFFGHIWHGARTLFLDVFTGVDPTRQEEEFEYGVFKKLGDPTTRRDETEAA

Sequences:

>Translated_536_residues
MGLPWYRVHTVVTSDPGRLIAVHLMHTALVAGWAGSMAFFEASVFNPEDPVLDPMWRQGMYVIPFMARLGVINSWSGWSV
FGPFTADGLGNRIDPNVANVGFWSFEGVAAAHIVLSGLLFLAACWHWVNWDLELFRNPRNGELGLDLPKIFGIHLLLSGL
ACFGFGAVHMQTIGMWVSADPIYVELGKYGNLLQGMNPEALGVVVPTGFAWGADGFNPYNPAGIAAHHVAAGIVGILGGI
FHIAVRPPERLYRALRMGNIETVLASALAAVFFAAFVVAGTFWYGTATNPVELFGPVRYFWDAQVYDKKVNELVTANVAK
GMSRAEAENAVPLRLRFYDYVGNSPAKGGLFRGGPMNNGDGVATGWLGQPVFKDKEGRELRVVHLNTLYETQPVVLVDSN
NIPRADIPFQRSESQLSFEQTGVTVSFVGGKLNGQSFEDPAQVKSYAKRAQLGELIEFDTKDADGVFRTSTRGWFVLAHG
IFALLFFFGHIWHGARTLFLDVFTGVDPTRQEEEFEYGVFKKLGDPTTRRDETEAA
>Mature_535_residues
GLPWYRVHTVVTSDPGRLIAVHLMHTALVAGWAGSMAFFEASVFNPEDPVLDPMWRQGMYVIPFMARLGVINSWSGWSVF
GPFTADGLGNRIDPNVANVGFWSFEGVAAAHIVLSGLLFLAACWHWVNWDLELFRNPRNGELGLDLPKIFGIHLLLSGLA
CFGFGAVHMQTIGMWVSADPIYVELGKYGNLLQGMNPEALGVVVPTGFAWGADGFNPYNPAGIAAHHVAAGIVGILGGIF
HIAVRPPERLYRALRMGNIETVLASALAAVFFAAFVVAGTFWYGTATNPVELFGPVRYFWDAQVYDKKVNELVTANVAKG
MSRAEAENAVPLRLRFYDYVGNSPAKGGLFRGGPMNNGDGVATGWLGQPVFKDKEGRELRVVHLNTLYETQPVVLVDSNN
IPRADIPFQRSESQLSFEQTGVTVSFVGGKLNGQSFEDPAQVKSYAKRAQLGELIEFDTKDADGVFRTSTRGWFVLAHGI
FALLFFFGHIWHGARTLFLDVFTGVDPTRQEEEFEYGVFKKLGDPTTRRDETEAA

Specific function: This protein conjugates with chlorophyll and catalyzes the primary light-induced photochemical processes of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR017486 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 58860; Mature: 58729

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPWYRVHTVVTSDPGRLIAVHLMHTALVAGWAGSMAFFEASVFNPEDPVLDPMWRQGM
CCCCEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCHHHHCCE
YVIPFMARLGVINSWSGWSVFGPFTADGLGNRIDPNVANVGFWSFEGVAAAHIVLSGLLF
EEEEHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHH
LAACWHWVNWDLELFRNPRNGELGLDLPKIFGIHLLLSGLACFGFGAVHMQTIGMWVSAD
HHHHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEECC
PIYVELGKYGNLLQGMNPEALGVVVPTGFAWGADGFNPYNPAGIAAHHVAAGIVGILGGI
CEEEEECCCCCHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FHIAVRPPERLYRALRMGNIETVLASALAAVFFAAFVVAGTFWYGTATNPVELFGPVRYF
HEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCHHHH
WDAQVYDKKVNELVTANVAKGMSRAEAENAVPLRLRFYDYVGNSPAKGGLFRGGPMNNGD
HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
GVATGWLGQPVFKDKEGRELRVVHLNTLYETQPVVLVDSNNIPRADIPFQRSESQLSFEQ
CEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHH
TGVTVSFVGGKLNGQSFEDPAQVKSYAKRAQLGELIEFDTKDADGVFRTSTRGWFVLAHG
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEHHHHH
IFALLFFFGHIWHGARTLFLDVFTGVDPTRQEEEFEYGVFKKLGDPTTRRDETEAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLPWYRVHTVVTSDPGRLIAVHLMHTALVAGWAGSMAFFEASVFNPEDPVLDPMWRQGM
CCCEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCHHHHCCE
YVIPFMARLGVINSWSGWSVFGPFTADGLGNRIDPNVANVGFWSFEGVAAAHIVLSGLLF
EEEEHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHH
LAACWHWVNWDLELFRNPRNGELGLDLPKIFGIHLLLSGLACFGFGAVHMQTIGMWVSAD
HHHHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEECC
PIYVELGKYGNLLQGMNPEALGVVVPTGFAWGADGFNPYNPAGIAAHHVAAGIVGILGGI
CEEEEECCCCCHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FHIAVRPPERLYRALRMGNIETVLASALAAVFFAAFVVAGTFWYGTATNPVELFGPVRYF
HEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCHHHH
WDAQVYDKKVNELVTANVAKGMSRAEAENAVPLRLRFYDYVGNSPAKGGLFRGGPMNNGD
HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
GVATGWLGQPVFKDKEGRELRVVHLNTLYETQPVVLVDSNNIPRADIPFQRSESQLSFEQ
CEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHH
TGVTVSFVGGKLNGQSFEDPAQVKSYAKRAQLGELIEFDTKDADGVFRTSTRGWFVLAHG
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEHHHHH
IFALLFFFGHIWHGARTLFLDVFTGVDPTRQEEEFEYGVFKKLGDPTTRRDETEAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2485088; 11759840 [H]