Click here to switch to the map view.

The map label for this gene is atpH

Identifier: 37522478

GI number: 37522478

Start: 3104582

End: 3104830

Strand: Reverse

Name: atpH

Synonym: gvip402

Alternate gene names: 37522478

Gene position: 3104830-3104582 (Counterclockwise)

Preceding gene: 37522479

Following gene: 37522477

Centisome position: 66.64

GC content: 63.45

Gene sequence:

>249_bases
ATGAACGATATTACTGCTGCTGCTTCGGTGATCGCTGCCGCCCTCGCGGTCGGCCTGGCGGCCATCGGTCCCGGTATCGG
CCAGGGCAATGCGGCGAGCAAAGCCGCCGAAGGGATCGCCCGTCAACCCGAAGCCGAAGGCAAGATCCGCGGCACGCTGC
TGCTGTCGCTCGCCTTCATGGAATCGCTGACCATCTACGGTCTGCTCGTATCGATCGTGCTGTTGTTCGCCAACCCGTTC
CGGGGCTAA

Upstream 100 bases:

>100_bases
ACCGCGTCCTATGTCGGTGAAGCGGTCGAGGACCACGACGACCACCATTAGTCCGACGGTGGTCTCAATACACAATGGAC
GTTTTATTAGGAGTGTCGCA

Downstream 100 bases:

>100_bases
GCCGCTGGCGGAGGGGTTGATCGTGGATATGCTGTTTGACCCGGGTTGGGCCGCTCACCTGCTGCTTTTGGCGGCCGAGG
AAGCGGCGGCGGCGGAGGCT

Product: F0F1 ATP synthase subunit C

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit c; F-type ATPase subunit c; F-ATPase subunit c; Lipid-binding protein

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MNDITAAASVIAAALAVGLAAIGPGIGQGNAASKAAEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLLVSIVLLFANPF
RG

Sequences:

>Translated_82_residues
MNDITAAASVIAAALAVGLAAIGPGIGQGNAASKAAEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLLVSIVLLFANPF
RG
>Mature_82_residues
MNDITAAASVIAAALAVGLAAIGPGIGQGNAASKAAEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLLVSIVLLFANPF
RG

Specific function: Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits

COG id: COG0636

COG function: function code C; F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase C chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPL_GLOVI (Q7NCR9)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_925855.1
- HSSP:   Q8KRV3
- ProteinModelPortal:   Q7NCR9
- SMR:   Q7NCR9
- GeneID:   2601310
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.2909
- HOGENOM:   HBG753983
- OMA:   IGQGNAS
- ProtClustDB:   PRK07354
- BioCyc:   GVIO251221:GSL2909-MONOMER
- HAMAP:   MF_01396
- InterPro:   IPR000454
- InterPro:   IPR005953
- InterPro:   IPR020537
- InterPro:   IPR002379
- Gene3D:   G3DSA:1.20.20.10
- PRINTS:   PR00124
- TIGRFAMs:   TIGR01260

Pfam domain/function: PF00137 ATP-synt_C; SSF81333 ATPase_F0/V0_c

EC number: 3.6.3.14

Molecular weight: Translated: 8196; Mature: 8196

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00605 ATPASE_C

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x16115c78)-; HASH(0x15d955e0)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDITAAASVIAAALAVGLAAIGPGIGQGNAASKAAEGIARQPEAEGKIRGTLLLSLAFM
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ESLTIYGLLVSIVLLFANPFRG
HHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MNDITAAASVIAAALAVGLAAIGPGIGQGNAASKAAEGIARQPEAEGKIRGTLLLSLAFM
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ESLTIYGLLVSIVLLFANPFRG
HHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292