Click here to switch to the map view.

The map label for this gene is psbA

Identifier: 37522225

GI number: 37522225

Start: 2815893

End: 2816981

Strand: Direct

Name: psbA

Synonym: gvip373

Alternate gene names: 37522225

Gene position: 2815893-2816981 (Clockwise)

Preceding gene: 37522223

Following gene: 37522227

Centisome position: 60.44

GC content: 60.33

Gene sequence:

>1089_bases
ATGACTGCAACTCTCGAGCGCCGTCAGGCGCAGGGGTTGTGGGATCGCTTCGCCGATTGGGTGACCTCCACCCACAACCG
CTTCTACGTCGGTTGGTTCGGCGTGCTCATGATCCCCACCTTACTCTCGGCCACCATCTGTTTTGTGATTGCCTTCGTGG
CTGCGCCGCCGGTGGATATGGACGGCATCCGCGAGCCGATCTCGGGCTCACTGCTGTACGGCAACAACATCATCACCGGG
GCGGTGATCCCGTCTTCCAACGCCATTGGCCTGCACTTCTACCCAATTTGGGAAGCGGCTTCGATGGACGAGTGGCTCTA
CAACGGCGGCCCCTACCAGCTGGTGGTCTTCCATTTTTTGATTGGGGTGTTTTGCTACCTGGGCCGCGAGTGGGAGCTCA
GCTACCGTTTGGGCCTGCGTCCGTGGATCTGCATCGCCTACAGCGCTCCTGTGGCCGCCGCGACCGCCGTTTTCCTCGTC
TACCCGATCGGCCAGGGCAGCTTCAGTGACGGGATGCCCCTGGGCATTTCGGGCACGTTCAACTTCATGTTTGTTTTTCA
GGCGGAGCACAACATCCTCAACCACCCCTTCCACATGCTGGGGGTGGCGGGGGTGTTCGGCGGGGCGTTGATTTCGGCCA
TGCACGGCAGCCTGGTCACTTCTTCGCTGGTGAGCGAGACTTCCTACGAAGAGTCGCAGAACTACGGCTACAAGTTCGGC
CAGGCGGAGGAGACTTACAACATCTCTGCTGCCCACGGCTACATCAGTCGGCTCGTCTTCCAGTACTTCGCGTTCTGGGG
GGCGAATTCCCGCTCGCTGCACTTTATCATGGCGGCCTTCCCGGTGATCGGCATCTGGTTTACCTCGCTGGGTATCAGCG
TGATGGCGTTCAACCTGAACGGCTTCAATTTCAACAGCAGCATCGTGGATTCTCAGGGCCGGGCGATTTACACGTGGGCG
GACATCGTCAACCGGGCAAATCTGGGCATGGAAGTGATGCACGAGCGCAATGCCCACAACTTCCCGCTGGATCTGGCCGG
GACGGAGTCGGCTCCGGTGGCGGTCAGCACCGCTAAAGTGGGCGGTTAG

Upstream 100 bases:

>100_bases
ACTTGCCTGGAAGCGGCCGGGGCGCTGTTACAGACTGTTAACTGTCAGGCGACCGGATGCCTATCCGGTTGCAACGAAAC
CCTTATTTTGGAGTGCTGCT

Downstream 100 bases:

>100_bases
TATTTCGACTTTGAGAGGGAGGCTCTACCGGTCTCCTTCCTTTGCGGAGCGGATCAAAGACTCCTGAGCTTCCCCCCGAG
AAGGCTTTTGGGTCTTCTCA

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 3; Photosystem II protein D1 3

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MTATLERRQAQGLWDRFADWVTSTHNRFYVGWFGVLMIPTLLSATICFVIAFVAAPPVDMDGIREPISGSLLYGNNIITG
AVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAATAVFLV
YPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILNHPFHMLGVAGVFGGALISAMHGSLVTSSLVSETSYEESQNYGYKFG
QAEETYNISAAHGYISRLVFQYFAFWGANSRSLHFIMAAFPVIGIWFTSLGISVMAFNLNGFNFNSSIVDSQGRAIYTWA
DIVNRANLGMEVMHERNAHNFPLDLAGTESAPVAVSTAKVGG

Sequences:

>Translated_362_residues
MTATLERRQAQGLWDRFADWVTSTHNRFYVGWFGVLMIPTLLSATICFVIAFVAAPPVDMDGIREPISGSLLYGNNIITG
AVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAATAVFLV
YPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILNHPFHMLGVAGVFGGALISAMHGSLVTSSLVSETSYEESQNYGYKFG
QAEETYNISAAHGYISRLVFQYFAFWGANSRSLHFIMAAFPVIGIWFTSLGISVMAFNLNGFNFNSSIVDSQGRAIYTWA
DIVNRANLGMEVMHERNAHNFPLDLAGTESAPVAVSTAKVGG
>Mature_361_residues
TATLERRQAQGLWDRFADWVTSTHNRFYVGWFGVLMIPTLLSATICFVIAFVAAPPVDMDGIREPISGSLLYGNNIITGA
VIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAATAVFLVY
PIGQGSFSDGMPLGISGTFNFMFVFQAEHNILNHPFHMLGVAGVFGGALISAMHGSLVTSSLVSETSYEESQNYGYKFGQ
AEETYNISAAHGYISRLVFQYFAFWGANSRSLHFIMAAFPVIGIWFTSLGISVMAFNLNGFNFNSSIVDSQGRAIYTWAD
IVNRANLGMEVMHERNAHNFPLDLAGTESAPVAVSTAKVGG

Specific function: This is one of the two reaction center proteins of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBA3_GLOVI (Q7NH81)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_925602.1
- HSSP:   P51765
- ProteinModelPortal:   Q7NH81
- SMR:   Q7NH81
- GeneID:   2601057
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.2656
- HOGENOM:   HBG284766
- ProtClustDB:   CLSK892431
- BioCyc:   GVIO251221:GLR2656-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01379
- InterPro:   IPR000484
- InterPro:   IPR005867
- Gene3D:   G3DSA:1.20.85.10
- PRINTS:   PR00256
- TIGRFAMs:   TIGR01151

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39799; Mature: 39668

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00244 REACTION_CENTER; PS00137 SUBTILASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14dc9094)-; HASH(0x15e67d94)-; HASH(0x1581e88c)-; HASH(0x15aa3410)-; HASH(0x15266b5c)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATLERRQAQGLWDRFADWVTSTHNRFYVGWFGVLMIPTLLSATICFVIAFVAAPPVDM
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DGIREPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFL
HHCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHH
IGVFCYLGREWELSYRLGLRPWICIAYSAPVAAATAVFLVYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMFVFQAEHNILNHPFHMLGVAGVFGGALISAMHGSLVTSSLVSETSYEESQNYGYKFG
EEEEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
QAEETYNISAAHGYISRLVFQYFAFWGANSRSLHFIMAAFPVIGIWFTSLGISVMAFNLN
CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEEEC
GFNFNSSIVDSQGRAIYTWADIVNRANLGMEVMHERNAHNFPLDLAGTESAPVAVSTAKV
CCCCCCCEECCCCCEEEEHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCCEEEEECCC
GG
CH
>Mature Secondary Structure 
TATLERRQAQGLWDRFADWVTSTHNRFYVGWFGVLMIPTLLSATICFVIAFVAAPPVDM
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DGIREPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFL
HHCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHH
IGVFCYLGREWELSYRLGLRPWICIAYSAPVAAATAVFLVYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMFVFQAEHNILNHPFHMLGVAGVFGGALISAMHGSLVTSSLVSETSYEESQNYGYKFG
EEEEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
QAEETYNISAAHGYISRLVFQYFAFWGANSRSLHFIMAAFPVIGIWFTSLGISVMAFNLN
CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEEEC
GFNFNSSIVDSQGRAIYTWADIVNRANLGMEVMHERNAHNFPLDLAGTESAPVAVSTAKV
CCCCCCCEECCCCCEEEEHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCCEEEEECCC
GG
CH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292