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The map label for this gene is psbC [H]

Identifier: 37521893

GI number: 37521893

Start: 2488873

End: 2490297

Strand: Direct

Name: psbC [H]

Synonym: gvip319

Alternate gene names: 37521893

Gene position: 2488873-2490297 (Clockwise)

Preceding gene: 37521892

Following gene: 37521896

Centisome position: 53.42

GC content: 61.61

Gene sequence:

>1425_bases
GTGGAAACGCGCTTTGATCAGTCGTTTGACGCGCAAAATATTCGCGTCAGACAAGAAGACTACGCCTGGTGGGCGGGCAA
TGCCCGGCTCATCAACCTGTCCGGTAAGCTCCTCGGAGCGCACGTCGCCCATGCAGGCTTGATCGTGTTCTGGACGGGTG
CTATGACCCTGTTCGAACTGGCCCACTTTGAGACGGCCAAGCCGATGTACGAGCAGGGCCTGATTCTCCTGCCGCACCTT
GCCACCCTGGGTTGGGGCCTCGGCACCGGCGCGAACGGCTTCCAGGTGGTAGACACCTGGCCCTACTTCGTCGTTGGTGT
GCTCCACCTGATTTCTTCGGCGGTGCTCGGTTTCGGCGGCATCTACCACTCGATCTGGGGGCCGGACATCCTGTCGGGCT
TCTTCGGCTACGACTGGAAAGACAAGAACAAGATGACCACCATCCTGGGCATCCACCTGATCCTGCTTGGGATCGGTTGC
TTCCTGCTGGTGGCCAAGGCCTGCTGGTTTGGCGGCATCTACGACCCCTGGTTCTTCGACAACAACAACCAGTGGGCCGG
CCAGGTGCGCACCGTCACCAATCCGACCCTCGACCCGACGGTCATCTTCGGCTACGTCCTGAAGAGCCCCTTCGGCGGCG
ACGGCTGGATCATCTCGGTGGATAACCTTGAGGACATCATCGGCGGCCACATCTGGATCGGTGCTGTCTGCATCGCGGGC
GGCATCTGGCATATCGTCACCAAGCCGTTCGGCTGGGCGCAGCGCTCGTTCATCTGGTCGGGCGAAGCGTACCTGTCCTA
CTCGCTCGGTGCCCTGTCGCTGATGGGCTTCATCGCCAGTGCCTACGTTTGGTTCAACAACACCGCCTATCCCTCCGAGT
TCTACGGTCCTACCGAAATGGAGGCCAGCCACGCCCAGAACTTCGTGTTCATGGCGCGCGACATCAAGCTCGGCACCGAC
ATCGGTGCGGCCCAGGGTCCGACCGGCCTTGGCAAGTACCTGATGCGTTCGCCCTCGGGCCAGGTGATTTACGGCGGTGA
AACCATGCGCTTCTGGTCGATCAAGACCCCCCTTGACGAGATGCTCAAGGAAGGTGTTGAGATCCAGAACAACAAGCTGG
TCTATCCCGTAGGCGGCACCACCGGCTACTCGGTCGAGAAGATCATGACCGAGATCCAGCCCTGGCAGATCCGTCGCGCC
GCCGAGTACATGACCCACGCGGCCATCGGCTCGCTCAACTCGGTGGGTGGTGTGGCGACTGAGATCAATACGATCAACTA
CACCTCGCCCCGCATCTGGCTGTCGGGAAGCCACTTCATCCTGGGCTTCTTCCTGCTGATTGGTCACCTGTGGCACGCCG
GTCGCGCCCGGGCCGCCAACGCCGGCTTCGAGAAGGGCATCGTCCGCGGCACCGAAGGAGCCTAA

Upstream 100 bases:

>100_bases
ACCGCGAACATTCTGATCAACGAAGGTATCCGCGCCTGGATGGGTCCCTACGACCAGAACTACGACGAGACGCTCAAGTT
CCCTGAAGAGGTGCTGCCCC

Downstream 100 bases:

>100_bases
CTTAGGTTGCTTCAAGCCTCGAAGAAAGCCCCTGCTTCGGCGGGGGCTTTTTGTTCTGTTCTACTGATGAAATGATCCAC
ACTGGTGCGGCCTTTATTAG

Product: photosystem II CP43 protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
METRFDQSFDAQNIRVRQEDYAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFELAHFETAKPMYEQGLILLPHL
ATLGWGLGTGANGFQVVDTWPYFVVGVLHLISSAVLGFGGIYHSIWGPDILSGFFGYDWKDKNKMTTILGIHLILLGIGC
FLLVAKACWFGGIYDPWFFDNNNQWAGQVRTVTNPTLDPTVIFGYVLKSPFGGDGWIISVDNLEDIIGGHIWIGAVCIAG
GIWHIVTKPFGWAQRSFIWSGEAYLSYSLGALSLMGFIASAYVWFNNTAYPSEFYGPTEMEASHAQNFVFMARDIKLGTD
IGAAQGPTGLGKYLMRSPSGQVIYGGETMRFWSIKTPLDEMLKEGVEIQNNKLVYPVGGTTGYSVEKIMTEIQPWQIRRA
AEYMTHAAIGSLNSVGGVATEINTINYTSPRIWLSGSHFILGFFLLIGHLWHAGRARAANAGFEKGIVRGTEGA

Sequences:

>Translated_474_residues
METRFDQSFDAQNIRVRQEDYAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFELAHFETAKPMYEQGLILLPHL
ATLGWGLGTGANGFQVVDTWPYFVVGVLHLISSAVLGFGGIYHSIWGPDILSGFFGYDWKDKNKMTTILGIHLILLGIGC
FLLVAKACWFGGIYDPWFFDNNNQWAGQVRTVTNPTLDPTVIFGYVLKSPFGGDGWIISVDNLEDIIGGHIWIGAVCIAG
GIWHIVTKPFGWAQRSFIWSGEAYLSYSLGALSLMGFIASAYVWFNNTAYPSEFYGPTEMEASHAQNFVFMARDIKLGTD
IGAAQGPTGLGKYLMRSPSGQVIYGGETMRFWSIKTPLDEMLKEGVEIQNNKLVYPVGGTTGYSVEKIMTEIQPWQIRRA
AEYMTHAAIGSLNSVGGVATEINTINYTSPRIWLSGSHFILGFFLLIGHLWHAGRARAANAGFEKGIVRGTEGA
>Mature_474_residues
METRFDQSFDAQNIRVRQEDYAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFELAHFETAKPMYEQGLILLPHL
ATLGWGLGTGANGFQVVDTWPYFVVGVLHLISSAVLGFGGIYHSIWGPDILSGFFGYDWKDKNKMTTILGIHLILLGIGC
FLLVAKACWFGGIYDPWFFDNNNQWAGQVRTVTNPTLDPTVIFGYVLKSPFGGDGWIISVDNLEDIIGGHIWIGAVCIAG
GIWHIVTKPFGWAQRSFIWSGEAYLSYSLGALSLMGFIASAYVWFNNTAYPSEFYGPTEMEASHAQNFVFMARDIKLGTD
IGAAQGPTGLGKYLMRSPSGQVIYGGETMRFWSIKTPLDEMLKEGVEIQNNKLVYPVGGTTGYSVEKIMTEIQPWQIRRA
AEYMTHAAIGSLNSVGGVATEINTINYTSPRIWLSGSHFILGFFLLIGHLWHAGRARAANAGFEKGIVRGTEGA

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 52193; Mature: 52193

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRFDQSFDAQNIRVRQEDYAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFEL
CCCCCCCCCCCCCEEEEECCCEEECCCEEEEEECCCHHHHHHHHCCEEEEEHHHHHHHHH
AHFETAKPMYEQGLILLPHLATLGWGLGTGANGFQVVDTWPYFVVGVLHLISSAVLGFGG
HHHHCCCCHHHCCCEEECCHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
IYHSIWGPDILSGFFGYDWKDKNKMTTILGIHLILLGIGCFLLVAKACWFGGIYDPWFFD
HHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEC
NNNQWAGQVRTVTNPTLDPTVIFGYVLKSPFGGDGWIISVDNLEDIIGGHIWIGAVCIAG
CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHC
GIWHIVTKPFGWAQRSFIWSGEAYLSYSLGALSLMGFIASAYVWFNNTAYPSEFYGPTEM
CHHEECCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHEEEECCCCCCHHCCCCCCC
EASHAQNFVFMARDIKLGTDIGAAQGPTGLGKYLMRSPSGQVIYGGETMRFWSIKTPLDE
CHHHCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCEEECCCEEEEEEECCCHHH
MLKEGVEIQNNKLVYPVGGTTGYSVEKIMTEIQPWQIRRAAEYMTHAAIGSLNSVGGVAT
HHHCCCEECCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
EINTINYTSPRIWLSGSHFILGFFLLIGHLWHAGRARAANAGFEKGIVRGTEGA
EEEEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
METRFDQSFDAQNIRVRQEDYAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFEL
CCCCCCCCCCCCCEEEEECCCEEECCCEEEEEECCCHHHHHHHHCCEEEEEHHHHHHHHH
AHFETAKPMYEQGLILLPHLATLGWGLGTGANGFQVVDTWPYFVVGVLHLISSAVLGFGG
HHHHCCCCHHHCCCEEECCHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
IYHSIWGPDILSGFFGYDWKDKNKMTTILGIHLILLGIGCFLLVAKACWFGGIYDPWFFD
HHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEC
NNNQWAGQVRTVTNPTLDPTVIFGYVLKSPFGGDGWIISVDNLEDIIGGHIWIGAVCIAG
CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHC
GIWHIVTKPFGWAQRSFIWSGEAYLSYSLGALSLMGFIASAYVWFNNTAYPSEFYGPTEM
CHHEECCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHEEEECCCCCCHHCCCCCCC
EASHAQNFVFMARDIKLGTDIGAAQGPTGLGKYLMRSPSGQVIYGGETMRFWSIKTPLDE
CHHHCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCEEECCCEEEEEEECCCHHH
MLKEGVEIQNNKLVYPVGGTTGYSVEKIMTEIQPWQIRRAAEYMTHAAIGSLNSVGGVAT
HHHCCCEECCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
EINTINYTSPRIWLSGSHFILGFFLLIGHLWHAGRARAANAGFEKGIVRGTEGA
EEEEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]