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The map label for this gene is psbD [H]

Identifier: 37521892

GI number: 37521892

Start: 2487828

End: 2488889

Strand: Direct

Name: psbD [H]

Synonym: gvip318

Alternate gene names: 37521892

Gene position: 2487828-2488889 (Clockwise)

Preceding gene: 37521891

Following gene: 37521893

Centisome position: 53.4

GC content: 59.7

Gene sequence:

>1062_bases
ATGACCATCGCTGTAGGAAGAAGTGAGCAGAGCCAAGGGTGGTTCGACGCCCTTGACGACTGGCTCAAGAAGGACCGCTT
CGTTTTCATCGGTTGGTCCGGCCTGCTGTTCTTCCCCACTGCTTACCTCGCCGTGGGTGCCTGGCTGACCGGCACGACCT
TCGTCACCTCCTGGTTTACCCATGGGCTCGCCAGCTCCTACCTTGAAGGTGGCAACTTCCTGACCGTCGCCGTCAGCTCG
CCTGCCGACGCGATGGGTCACTCGCTGCTTCTGCTGTGGGGTCCTGAAGCCCAGGGTGACTTTACCCGCTGGTGCCAGAT
TGGCGGGCTTTGGGCGTTTATCTCCTTTCACGGCGCTCTGGCGTTGATGGGCTTCATGCTCCGCCAGTTCGAAATTGCTC
GCCTGATCGGCATCCGTCCTTACAACGCGATCGCCTTCTCGGCTCCGATCGCCGTGTTCGTTTCGGTCTTCTTGATGTAC
CCGCTGGGCCAGCACTCCTGGTTCTTCGGCCCCAGCTACGGCGTCAACGGCATCTTCCGCTTCTTGCTGTTCTTCCAGGG
CTTCCACAACTGGACGCTGAACCCCTTCCACATGATGGGTGTGGCGGGTGTGCTCGGTGGTGCCCTGCTGTGCGCCATCC
ACGGCGCCACGGTCGAGAACACCCTGTTTGAAGACGGCGAAGCGCCCAACACCTTCAAGGCCTTCGACCCCGCCCAAGAA
GAAGAGACCTACTCGATGATCCTGGCAAACCGCTTCTGGAGCCAGATCTTCGGTATCGCCTTCTCCAACAAGCGCTGGCT
GCACTTCTTCATGCTGTTCGTGCCCGTCACCGGTCTGTGGATGGCTTCCATCGGCATTATCGGTGTGGCCCTGAACCTGC
GGGCTTACGAGTTCGTTTCCCAGGAAATCCGCGCTGCGCAGGATCCTGAGTTTGAGACTCTCTACACCGCGAACATTCTG
ATCAACGAAGGTATCCGCGCCTGGATGGGTCCCTACGACCAGAACTACGACGAGACGCTCAAGTTCCCTGAAGAGGTGCT
GCCCCGTGGAAACGCGCTTTGA

Upstream 100 bases:

>100_bases
GGAGAAGGGGGCATAGCTCCCTTCTCCTCCTCCTCAGATAGACCGGTAGCCAGAATTGGCAAGACCGACATAAAACGATC
CTTAAACGGAGACTTGAGCA

Downstream 100 bases:

>100_bases
TCAGTCGTTTGACGCGCAAAATATTCGCGTCAGACAAGAAGACTACGCCTGGTGGGCGGGCAATGCCCGGCTCATCAACC
TGTCCGGTAAGCTCCTCGGA

Product: photosystem II protein D2

Products: NA

Alternate protein names: PSII D2 protein 1; Photosystem Q(A) protein 1 [H]

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTIAVGRSEQSQGWFDALDDWLKKDRFVFIGWSGLLFFPTAYLAVGAWLTGTTFVTSWFTHGLASSYLEGGNFLTVAVSS
PADAMGHSLLLLWGPEAQGDFTRWCQIGGLWAFISFHGALALMGFMLRQFEIARLIGIRPYNAIAFSAPIAVFVSVFLMY
PLGQHSWFFGPSYGVNGIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGEAPNTFKAFDPAQE
EETYSMILANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMASIGIIGVALNLRAYEFVSQEIRAAQDPEFETLYTANIL
INEGIRAWMGPYDQNYDETLKFPEEVLPRGNAL

Sequences:

>Translated_353_residues
MTIAVGRSEQSQGWFDALDDWLKKDRFVFIGWSGLLFFPTAYLAVGAWLTGTTFVTSWFTHGLASSYLEGGNFLTVAVSS
PADAMGHSLLLLWGPEAQGDFTRWCQIGGLWAFISFHGALALMGFMLRQFEIARLIGIRPYNAIAFSAPIAVFVSVFLMY
PLGQHSWFFGPSYGVNGIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGEAPNTFKAFDPAQE
EETYSMILANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMASIGIIGVALNLRAYEFVSQEIRAAQDPEFETLYTANIL
INEGIRAWMGPYDQNYDETLKFPEEVLPRGNAL
>Mature_352_residues
TIAVGRSEQSQGWFDALDDWLKKDRFVFIGWSGLLFFPTAYLAVGAWLTGTTFVTSWFTHGLASSYLEGGNFLTVAVSSP
ADAMGHSLLLLWGPEAQGDFTRWCQIGGLWAFISFHGALALMGFMLRQFEIARLIGIRPYNAIAFSAPIAVFVSVFLMYP
LGQHSWFFGPSYGVNGIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGEAPNTFKAFDPAQEE
ETYSMILANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMASIGIIGVALNLRAYEFVSQEIRAAQDPEFETLYTANILI
NEGIRAWMGPYDQNYDETLKFPEEVLPRGNAL

Specific function: One of the two reaction center proteins of photosystem II (PSII), D2 is needed for assembly of a stable PSII complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005868 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39575; Mature: 39444

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAVGRSEQSQGWFDALDDWLKKDRFVFIGWSGLLFFPTAYLAVGAWLTGTTFVTSWFT
CEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLASSYLEGGNFLTVAVSSPADAMGHSLLLLWGPEAQGDFTRWCQIGGLWAFISFHGAL
HHHHHHHHCCCCEEEEEECCCHHHCCCEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHH
ALMGFMLRQFEIARLIGIRPYNAIAFSAPIAVFVSVFLMYPLGQHSWFFGPSYGVNGIFR
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHH
FLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGEAPNTFKAFDPAQE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCH
EETYSMILANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMASIGIIGVALNLRAYEFVS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEIRAAQDPEFETLYTANILINEGIRAWMGPYDQNYDETLKFPEEVLPRGNAL
HHHHHCCCCCCCEEEEEHEEECCCHHHHCCCCCCCHHHHHCCCHHHCCCCCCC
>Mature Secondary Structure 
TIAVGRSEQSQGWFDALDDWLKKDRFVFIGWSGLLFFPTAYLAVGAWLTGTTFVTSWFT
EEECCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLASSYLEGGNFLTVAVSSPADAMGHSLLLLWGPEAQGDFTRWCQIGGLWAFISFHGAL
HHHHHHHHCCCCEEEEEECCCHHHCCCEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHH
ALMGFMLRQFEIARLIGIRPYNAIAFSAPIAVFVSVFLMYPLGQHSWFFGPSYGVNGIFR
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHH
FLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGEAPNTFKAFDPAQE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCH
EETYSMILANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMASIGIIGVALNLRAYEFVS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEIRAAQDPEFETLYTANILINEGIRAWMGPYDQNYDETLKFPEEVLPRGNAL
HHHHHCCCCCCCEEEEEHEEECCCHHHHCCCCCCCHHHHHCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA