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The map label for this gene is ybdK [C]

Identifier: 37521863

GI number: 37521863

Start: 2456889

End: 2458007

Strand: Reverse

Name: ybdK [C]

Synonym: gll2294

Alternate gene names: 37521863

Gene position: 2458007-2456889 (Counterclockwise)

Preceding gene: 37521864

Following gene: 37521862

Centisome position: 52.76

GC content: 64.7

Gene sequence:

>1119_bases
GTGACCATTCCTTTCCAGTCCTCCACCGCTCCGACCCTTGGGGTCGAGATGGAACTACAAATCATCGACCCCGCGACGGG
CAACCTCACCCCGCGCGGGCCGGAGCTGGTCACTTTTTGCGAGGAACACCCGGAGGTCGGACTGGTCGTCAAGCCTGAAC
TGGTGCAGGCCACCATCGAGATCAACACGGGCATTTGCAAAGATGTCGCCCAGGTCGAGCGGGATCTGACCACGCAGCTT
ACGCTGCTGCGCTCTGTCTGCCGCGAGCGCGGCGTGAGCTTTCTCTCGGCCGGCACCCACCCCTTTGCCCGCTGGCGCGA
GCGGCGCTACACCCAGACCCCCCGCTACCGCGCCTTGGTCGACAAACACGTCTGGACGGCCCGGCGGATGCAGATTTACG
GCCTGCACGTCCATGTCGGCATGCCCGACGGCGACACGGCCATCCAGGTGATCAACCAGATCACCCAGTACGCACCGATG
CTGTTGGCGCTCTCGGCCAATTCGCCCTTCTGGGAGGGTGACGACACGGGCCTGGATAGCTGCCGCACCAAAGTTTTCGA
GAATCTCTCCTCCGCCGGTCTGCCGTTTCGCTTCGAGAACTGGGAAGGCTACGAAAATCTGATCAACGTGCTGCTGGAGA
CCGGTTCGATCGGCAGCCAGCGCGAAATCTGGTGGGATATCCGGCCCCACTCCGACTTCGGCACCATCGAGGTGCGCATC
TGCGACGCCACCCGCACCCTGGCCGAGGTGCTCGCCCTCACCGCCCTGGTGCAGTGCCTGGCGGTGTATTTCCGGCGACT
CTACGAGAACGGCGAGGAGATCCGCCTGCTGCACCCCGGCATCATCCGCGAGAACAAGTGGCGCGCCTGCCGTTGGGGCC
TGGAGGGCGAACTGATCGACCCCCTCACCCTCAAAGGTGTTCCCACCCGCAAACTGATTGAGCAGACCGTGGGCGAGATG
CAGTCTCTGGCGGCAGAGTTGGGCTGCAGCGCCTATCTGGCGGCAATTCCCGCCATACTCGCATCCGGCAACGGTGCCAC
GCGCCAGCGGCGCATCTACTCCCAGTCCCGCTCGCTGGTGGCGGTGGTCGCCGACCTCGAAGCGGGCCTTGCCACCTAG

Upstream 100 bases:

>100_bases
GACGCATTTACCGCCGCCGCCGCCGCCAAGGACACCGTCTGGAAAGATTACCGCTACAATCTCAAGCAATCCGGTTTTTG
GCACGTCGAAACCTACTAAT

Downstream 100 bases:

>100_bases
GTATACTTGGTGAGCGACCGCAGCTCCTGGGCACAATTGGGAGGGTGTGAGGATGGTGCCATCTCCTTCGGCAGAAACGC
TCACCCTTATCGTGCAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MTIPFQSSTAPTLGVEMELQIIDPATGNLTPRGPELVTFCEEHPEVGLVVKPELVQATIEINTGICKDVAQVERDLTTQL
TLLRSVCRERGVSFLSAGTHPFARWRERRYTQTPRYRALVDKHVWTARRMQIYGLHVHVGMPDGDTAIQVINQITQYAPM
LLALSANSPFWEGDDTGLDSCRTKVFENLSSAGLPFRFENWEGYENLINVLLETGSIGSQREIWWDIRPHSDFGTIEVRI
CDATRTLAEVLALTALVQCLAVYFRRLYENGEEIRLLHPGIIRENKWRACRWGLEGELIDPLTLKGVPTRKLIEQTVGEM
QSLAAELGCSAYLAAIPAILASGNGATRQRRIYSQSRSLVAVVADLEAGLAT

Sequences:

>Translated_372_residues
MTIPFQSSTAPTLGVEMELQIIDPATGNLTPRGPELVTFCEEHPEVGLVVKPELVQATIEINTGICKDVAQVERDLTTQL
TLLRSVCRERGVSFLSAGTHPFARWRERRYTQTPRYRALVDKHVWTARRMQIYGLHVHVGMPDGDTAIQVINQITQYAPM
LLALSANSPFWEGDDTGLDSCRTKVFENLSSAGLPFRFENWEGYENLINVLLETGSIGSQREIWWDIRPHSDFGTIEVRI
CDATRTLAEVLALTALVQCLAVYFRRLYENGEEIRLLHPGIIRENKWRACRWGLEGELIDPLTLKGVPTRKLIEQTVGEM
QSLAAELGCSAYLAAIPAILASGNGATRQRRIYSQSRSLVAVVADLEAGLAT
>Mature_371_residues
TIPFQSSTAPTLGVEMELQIIDPATGNLTPRGPELVTFCEEHPEVGLVVKPELVQATIEINTGICKDVAQVERDLTTQLT
LLRSVCRERGVSFLSAGTHPFARWRERRYTQTPRYRALVDKHVWTARRMQIYGLHVHVGMPDGDTAIQVINQITQYAPML
LALSANSPFWEGDDTGLDSCRTKVFENLSSAGLPFRFENWEGYENLINVLLETGSIGSQREIWWDIRPHSDFGTIEVRIC
DATRTLAEVLALTALVQCLAVYFRRLYENGEEIRLLHPGIIRENKWRACRWGLEGELIDPLTLKGVPTRKLIEQTVGEMQ
SLAAELGCSAYLAAIPAILASGNGATRQRRIYSQSRSLVAVVADLEAGLAT

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=367, Percent_Identity=28.8828337874659, Blast_Score=186, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_GLOVI (Q7NI89)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_925240.1
- ProteinModelPortal:   Q7NI89
- SMR:   Q7NI89
- GeneID:   2600696
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:gll2294
- NMPDR:   fig|251221.1.peg.2294
- HOGENOM:   HBG564677
- OMA:   DKPRFQE
- BioCyc:   GVIO251221:GLL2294-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 41518; Mature: 41387

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPFQSSTAPTLGVEMELQIIDPATGNLTPRGPELVTFCEEHPEVGLVVKPELVQATIE
CCCCCCCCCCCEECEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECHHHEEEEEE
INTGICKDVAQVERDLTTQLTLLRSVCRERGVSFLSAGTHPFARWRERRYTQTPRYRALV
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCCHHHHHH
DKHVWTARRMQIYGLHVHVGMPDGDTAIQVINQITQYAPMLLALSANSPFWEGDDTGLDS
HHHHHHHHEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHH
CRTKVFENLSSAGLPFRFENWEGYENLINVLLETGSIGSQREIWWDIRPHSDFGTIEVRI
HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEE
CDATRTLAEVLALTALVQCLAVYFRRLYENGEEIRLLHPGIIRENKWRACRWGLEGELID
ECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCCCCCCCC
PLTLKGVPTRKLIEQTVGEMQSLAAELGCSAYLAAIPAILASGNGATRQRRIYSQSRSLV
CEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
AVVADLEAGLAT
EEEEHHHCCCCC
>Mature Secondary Structure 
TIPFQSSTAPTLGVEMELQIIDPATGNLTPRGPELVTFCEEHPEVGLVVKPELVQATIE
CCCCCCCCCCEECEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECHHHEEEEEE
INTGICKDVAQVERDLTTQLTLLRSVCRERGVSFLSAGTHPFARWRERRYTQTPRYRALV
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCCHHHHHH
DKHVWTARRMQIYGLHVHVGMPDGDTAIQVINQITQYAPMLLALSANSPFWEGDDTGLDS
HHHHHHHHEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHH
CRTKVFENLSSAGLPFRFENWEGYENLINVLLETGSIGSQREIWWDIRPHSDFGTIEVRI
HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEE
CDATRTLAEVLALTALVQCLAVYFRRLYENGEEIRLLHPGIIRENKWRACRWGLEGELID
ECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCCCCCCCC
PLTLKGVPTRKLIEQTVGEMQSLAAELGCSAYLAAIPAILASGNGATRQRRIYSQSRSLV
CEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
AVVADLEAGLAT
EEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14621292