BacMap

Definition	Gloeobacter violaceus PCC 7421 chromosome, complete genome.
Accession	NC_005125
Length	4,659,019

Click here to switch to the map view.

The map label for this gene is yahD [C]

Identifier: 37521636

GI number: 37521636

Start: 2219329

End: 2220252

Strand: Direct

Name: yahD [C]

Synonym: glr2067

Alternate gene names: 37521636

Gene position: 2219329-2220252 (Clockwise)

Preceding gene: 37521635

Following gene: 37521639

Centisome position: 47.64

GC content: 59.96

Gene sequence:

>924_bases
GTGGGACACCCCTCAGGAGGTCTCTATGATCCCGGAAGAATCAGATCCATCCCGACGAACAGAAACCCGATGGTTGATCA
AAAACTGATTCTCGCCATACAGAGAGCTGAAATCGCGCAAATTCGGCGATTGCTCGCAGATGGGGTGTCACCCAATGGTC
CTACAGTGGCCCCGTTGTTCGGCACCCGACCCCAGACATTGCCTTTGATCGAAGCCATTCGTTGTCGGCAAAAAGAGATC
GTTCATCTGTTGCTCGAAGCGGGAGCAGACCCGCAGGCCTCCGAATATTCCGGGGCGACACCGCTTGCAATGGCAGTCCA
CCTGAATTTTCAGGAGGCGGTACAGTTTTTGCTCGCCAAAGGAGCGAACGCAGAAACCGATCGACATTTGCGCAGTCCGA
ACGCACTAGTGCAAGCGATCAGGATTGGCGACAGCCATGCGGTGCGTCGGCAGTTGGAGGATGGCGCATCTGCGGAAGGG
CAGGCAGGTTTGCTCAAAGCGTTGGTGCGGCCGGAGGCGGTCCCTCTGGTCGAGGCGGTGCGCGGTGGGCAGCAAGAGAT
TGTGCGCCTGCTGCTTGAAGCGGGAGCCAATCCAAACGCGGCGGATAAACGCGGAGCCCTGCCTCTGAAGCTCGCAGTCC
ATCTGGGCAGCGAACCCATCGTCCGGCTACTTCTGGAGCACGGAGCCGATCCCAACAAACGCGCCAGTGGCGAGACCACC
AGTGCGCTCCAGCACGCCGCCTTCTACGGACATGTCGAATTGGTGCGTGTGCTGCTGGAGCACGGCGGGAACCCCGCCGC
GGTCCTGCAAACCAAGTCCCTGTTTCGCATTCGCGGGCCGATTTTGCAGATGCTCATCGACGCGGGCGGCGAAGCGCCGG
AGGAGATTCTGCAGATGCTGCGCGAAGGTTCGGCTTTGCCGTAA

Upstream 100 bases:

>100_bases
GAACTCCCCGCTCCCCGGGTTCGGTCTTCAAGGTCGATGCCCTAAATAACTATGAAAAGCTTCCCTACAAAGGACAAATC
TCTTGTCCGAAAGTGCGAGC

Downstream 100 bases:

>100_bases
GCAGGTGTCAGGACCAAACCGCTGCCCGTCAGGTTTTCCTAGACCTTTGCCTCGACCGCTTTACTCCCCATTCCATGCGC
AGCCTAGCGACCGGCCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MGHPSGGLYDPGRIRSIPTNRNPMVDQKLILAIQRAEIAQIRRLLADGVSPNGPTVAPLFGTRPQTLPLIEAIRCRQKEI
VHLLLEAGADPQASEYSGATPLAMAVHLNFQEAVQFLLAKGANAETDRHLRSPNALVQAIRIGDSHAVRRQLEDGASAEG
QAGLLKALVRPEAVPLVEAVRGGQQEIVRLLLEAGANPNAADKRGALPLKLAVHLGSEPIVRLLLEHGADPNKRASGETT
SALQHAAFYGHVELVRVLLEHGGNPAAVLQTKSLFRIRGPILQMLIDAGGEAPEEILQMLREGSALP

Sequences:

>Translated_307_residues
MGHPSGGLYDPGRIRSIPTNRNPMVDQKLILAIQRAEIAQIRRLLADGVSPNGPTVAPLFGTRPQTLPLIEAIRCRQKEI
VHLLLEAGADPQASEYSGATPLAMAVHLNFQEAVQFLLAKGANAETDRHLRSPNALVQAIRIGDSHAVRRQLEDGASAEG
QAGLLKALVRPEAVPLVEAVRGGQQEIVRLLLEAGANPNAADKRGALPLKLAVHLGSEPIVRLLLEHGADPNKRASGETT
SALQHAAFYGHVELVRVLLEHGGNPAAVLQTKSLFRIRGPILQMLIDAGGEAPEEILQMLREGSALP
>Mature_306_residues
GHPSGGLYDPGRIRSIPTNRNPMVDQKLILAIQRAEIAQIRRLLADGVSPNGPTVAPLFGTRPQTLPLIEAIRCRQKEIV
HLLLEAGADPQASEYSGATPLAMAVHLNFQEAVQFLLAKGANAETDRHLRSPNALVQAIRIGDSHAVRRQLEDGASAEGQ
AGLLKALVRPEAVPLVEAVRGGQQEIVRLLLEAGANPNAADKRGALPLKLAVHLGSEPIVRLLLEHGADPNKRASGETTS
ALQHAAFYGHVELVRVLLEHGGNPAAVLQTKSLFRIRGPILQMLIDAGGEAPEEILQMLREGSALP

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 8 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI32967601, Length=229, Percent_Identity=31.8777292576419, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI188595682, Length=193, Percent_Identity=34.1968911917098, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI52426737, Length=193, Percent_Identity=34.1968911917098, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI255982572, Length=182, Percent_Identity=32.4175824175824, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI22208951, Length=182, Percent_Identity=32.4175824175824, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI7705831, Length=182, Percent_Identity=32.4175824175824, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI70780355, Length=215, Percent_Identity=33.953488372093, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI70780357, Length=215, Percent_Identity=33.953488372093, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI70780353, Length=215, Percent_Identity=33.953488372093, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI215598574, Length=215, Percent_Identity=33.953488372093, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI52426735, Length=190, Percent_Identity=34.2105263157895, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI70780359, Length=215, Percent_Identity=33.953488372093, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI87239981, Length=251, Percent_Identity=30.2788844621514, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI38683807, Length=202, Percent_Identity=32.1782178217822, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI38683816, Length=202, Percent_Identity=32.1782178217822, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI13376842, Length=249, Percent_Identity=30.1204819277108, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI37620163, Length=200, Percent_Identity=32.5, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI46519147, Length=200, Percent_Identity=32.5, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI55741641, Length=266, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI22208957, Length=233, Percent_Identity=30.9012875536481, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI70995267, Length=182, Percent_Identity=31.8681318681319, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI10863929, Length=247, Percent_Identity=32.3886639676113, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI67906195, Length=202, Percent_Identity=33.1683168316832, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI18252778, Length=231, Percent_Identity=29.4372294372294, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI68131557, Length=240, Percent_Identity=29.5833333333333, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI30425444, Length=265, Percent_Identity=30.5660377358491, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI46519151, Length=204, Percent_Identity=32.843137254902, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI46519154, Length=204, Percent_Identity=32.843137254902, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI268607595, Length=233, Percent_Identity=30.9012875536481, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI62988328, Length=233, Percent_Identity=30.9012875536481, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI14149716, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI34304379, Length=254, Percent_Identity=27.1653543307087, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71981389, Length=195, Percent_Identity=35.3846153846154, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI25145251, Length=195, Percent_Identity=35.3846153846154, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17542700, Length=195, Percent_Identity=35.3846153846154, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71981414, Length=195, Percent_Identity=35.3846153846154, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71981411, Length=192, Percent_Identity=35.4166666666667, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17541900, Length=189, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17541898, Length=189, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193206531, Length=189, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193206533, Length=189, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28571867, Length=252, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28571865, Length=252, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281359521, Length=201, Percent_Identity=36.318407960199, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281359519, Length=201, Percent_Identity=36.318407960199, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28558752, Length=201, Percent_Identity=36.318407960199, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28558750, Length=201, Percent_Identity=36.318407960199, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28558756, Length=201, Percent_Identity=36.318407960199, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28558754, Length=201, Percent_Identity=36.318407960199, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581260, Length=202, Percent_Identity=31.1881188118812, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581258, Length=202, Percent_Identity=31.1881188118812, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI161082099, Length=191, Percent_Identity=33.5078534031414, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161082081, Length=191, Percent_Identity=33.5078534031414, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161082085, Length=191, Percent_Identity=33.5078534031414, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161082110, Length=191, Percent_Identity=33.5078534031414, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161082089, Length=191, Percent_Identity=33.5078534031414, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161082096, Length=191, Percent_Identity=33.5078534031414, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI161082106, Length=191, Percent_Identity=33.5078534031414, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI161082092, Length=191, Percent_Identity=33.5078534031414, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356741, Length=253, Percent_Identity=26.8774703557312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650843, Length=189, Percent_Identity=32.2751322751323, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 32822; Mature: 32691

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHPSGGLYDPGRIRSIPTNRNPMVDQKLILAIQRAEIAQIRRLLADGVSPNGPTVAPLF
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
GTRPQTLPLIEAIRCRQKEIVHLLLEAGADPQASEYSGATPLAMAVHLNFQEAVQFLLAK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHC
GANAETDRHLRSPNALVQAIRIGDSHAVRRQLEDGASAEGQAGLLKALVRPEAVPLVEAV
CCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHH
RGGQQEIVRLLLEAGANPNAADKRGALPLKLAVHLGSEPIVRLLLEHGADPNKRASGETT
CCCHHHHHHHHHHCCCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHH
SALQHAAFYGHVELVRVLLEHGGNPAAVLQTKSLFRIRGPILQMLIDAGGEAPEEILQML
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
REGSALP
HCCCCCC
>Mature Secondary Structure 
GHPSGGLYDPGRIRSIPTNRNPMVDQKLILAIQRAEIAQIRRLLADGVSPNGPTVAPLF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
GTRPQTLPLIEAIRCRQKEIVHLLLEAGADPQASEYSGATPLAMAVHLNFQEAVQFLLAK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHC
GANAETDRHLRSPNALVQAIRIGDSHAVRRQLEDGASAEGQAGLLKALVRPEAVPLVEAV
CCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHH
RGGQQEIVRLLLEAGANPNAADKRGALPLKLAVHLGSEPIVRLLLEHGADPNKRASGETT
CCCHHHHHHHHHHCCCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHH
SALQHAAFYGHVELVRVLLEHGGNPAAVLQTKSLFRIRGPILQMLIDAGGEAPEEILQML
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
REGSALP
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792869 [H]