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The map label for this gene is cpcF [H]

Identifier: 37520838

GI number: 37520838

Start: 1344057

End: 1344638

Strand: Direct

Name: cpcF [H]

Synonym: gvip186

Alternate gene names: 37520838

Gene position: 1344057-1344638 (Clockwise)

Preceding gene: 37520837

Following gene: 37520839

Centisome position: 28.85

GC content: 68.04

Gene sequence:

>582_bases
ATGAGCACCACCGAGGACACGGCCGTCGAACGCGCCCTTGTCGAATTTGCCCGCGCGGGCGCCCCGGCCGAATTGCTCGC
CATCGTGCGCACGATCGCCGCCGCGGGCGATCCGCGCGGCACCGAGCCCCTGATCCGGGCGTTGACGTTCAACGACGCTG
CCTTCCACGACCTCGCCATCGACGGGCTGACGGCCATCGGCGAACCGGCTGTGGAGCCGCTGCTGGCCAGCCTGGACGGC
ATGGATTACGGGGCGCGCTACCGGGCATTGCGCGCCCTGGTGGCAATTGGCGATCCGCGCGCCCGGCCGGCTTATGAGTA
CTGGCTGGGGGCCGACATCATCCCCGGCGTGCGCTGCATCTGCGTGAAGGGTCTTGCCCGTTTCCCCGACACCGAGCCGC
TGCTCCTGAAAGCCCTCGAAGACAAAGTCTGGGTAGTGCGCTACTACGCCATCCAGATGCTCTTCGAGCGGGGGCTCACC
CCGTTCACCCATGCCGCCCTGGAAGCACTGGCAACCGACCCGGAGCGGGTGGTGCGTTTGAAGCTCGCCCAGATCTTCGC
CCAGGTGAGTGCCGGAAGCTGA

Upstream 100 bases:

>100_bases
GTTGAAGCTGCTCGCCCTCAAGCAACTGGCGGACGTGCAGACCACCGACGCAGCGGCTGCTGACGTCCTGCCCTTTATCG
ATTCGATTCTGTAATCTGCG

Downstream 100 bases:

>100_bases
GGTGGCGCCTGCCGTAGCGGTTTGTTCGCTTTATATTTCGACATAAGATTGAGCTATTCCCACCGAATGGTGGGTGCTAA
ACGTGCGTCTATGGGGTGTT

Product: phycocyanobilin lyase alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSTTEDTAVERALVEFARAGAPAELLAIVRTIAAAGDPRGTEPLIRALTFNDAAFHDLAIDGLTAIGEPAVEPLLASLDG
MDYGARYRALRALVAIGDPRARPAYEYWLGADIIPGVRCICVKGLARFPDTEPLLLKALEDKVWVVRYYAIQMLFERGLT
PFTHAALEALATDPERVVRLKLAQIFAQVSAGS

Sequences:

>Translated_193_residues
MSTTEDTAVERALVEFARAGAPAELLAIVRTIAAAGDPRGTEPLIRALTFNDAAFHDLAIDGLTAIGEPAVEPLLASLDG
MDYGARYRALRALVAIGDPRARPAYEYWLGADIIPGVRCICVKGLARFPDTEPLLLKALEDKVWVVRYYAIQMLFERGLT
PFTHAALEALATDPERVVRLKLAQIFAQVSAGS
>Mature_192_residues
STTEDTAVERALVEFARAGAPAELLAIVRTIAAAGDPRGTEPLIRALTFNDAAFHDLAIDGLTAIGEPAVEPLLASLDGM
DYGARYRALRALVAIGDPRARPAYEYWLGADIIPGVRCICVKGLARFPDTEPLLLKALEDKVWVVRYYAIQMLFERGLTP
FTHAALEALATDPERVVRLKLAQIFAQVSAGS

Specific function: An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II alpha chain [H]

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: NA

Molecular weight: Translated: 20877; Mature: 20746

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTEDTAVERALVEFARAGAPAELLAIVRTIAAAGDPRGTEPLIRALTFNDAAFHDLAI
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
DGLTAIGEPAVEPLLASLDGMDYGARYRALRALVAIGDPRARPAYEYWLGADIIPGVRCI
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHH
CVKGLARFPDTEPLLLKALEDKVWVVRYYAIQMLFERGLTPFTHAALEALATDPERVVRL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
KLAQIFAQVSAGS
HHHHHHHHHHCCC
>Mature Secondary Structure 
STTEDTAVERALVEFARAGAPAELLAIVRTIAAAGDPRGTEPLIRALTFNDAAFHDLAI
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
DGLTAIGEPAVEPLLASLDGMDYGARYRALRALVAIGDPRARPAYEYWLGADIIPGVRCI
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHH
CVKGLARFPDTEPLLLKALEDKVWVVRYYAIQMLFERGLTPFTHAALEALATDPERVVRL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
KLAQIFAQVSAGS
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8425055 [H]