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The map label for this gene is cpcE [H]

Identifier: 37520837

GI number: 37520837

Start: 1343307

End: 1344050

Strand: Direct

Name: cpcE [H]

Synonym: gvip185

Alternate gene names: 37520837

Gene position: 1343307-1344050 (Clockwise)

Preceding gene: 37520836

Following gene: 37520838

Centisome position: 28.83

GC content: 65.59

Gene sequence:

>744_bases
ATGACCCTCATCACACCGGACACCAGTCTGACGGTCGAGGAGGCCGTCGAGCAGTTGCGTGGAGAGGATCTCAGCCAGCG
CTACTACGCGGCCTGGTACCTGGGCTATCTCGAGGACCCGCGCGCGGTGGAGGCGCTCGTCGCCGCCCTCGCCGACGAAT
CGGACCGCACAGAAATGGGCGGCTATCCGCTTAGACGCAAGGCGGCAGAATCGCTGGGCCGCATCGGCGAGGCGCGGGCG
GTGCCAAGCCTGGTCGAGATACTTGGGTGCGAGGATTACTACGTGCGCGAAGCCGCCGCCTGGTCTCTGGCGCGCATCGG
GGACGCGCTGGCGGTGGAGCCGCTGGTGGCGTTGCTCGGCCAGGGGGGTTCTCAGCCCTACGAAGCGATCATCGAAGCGC
TCGGGGATCTGCGCGTCCACCGGGCGGTGCCGCTCATCCAGCCTTTTTTGCAGGAGCGCTCCGAGCGCATACGCTACGCC
GCCGCCCGTTCGTTGTTTCAACTGACCGGGGAAGTGGCGCTGATTGACATTCTGCTCGGGGGACTGGCAAGCGCCGATTC
GCACATCCGCCGGGCAGCCCTGTTTGATCTGGCCGACACCGGTTATCTGCCCGCCGCCGTCAAGATTGTGCACGCCGATG
TGACGGCGACGTTGAAGCTGCTCGCCCTCAAGCAACTGGCGGACGTGCAGACCACCGACGCAGCGGCTGCTGACGTCCTG
CCCTTTATCGATTCGATTCTGTAA

Upstream 100 bases:

>100_bases
TGTGACCGTGCCCCTCGCCCGGTTGCTGCCCGAGATGCAGCTGATTAAAAACAAAGGCGGCAAGGTGCTCTCGGTCGAAC
CGGTGGTCTCCTAAGCATTC

Downstream 100 bases:

>100_bases
TCTGCGATGAGCACCACCGAGGACACGGCCGTCGAACGCGCCCTTGTCGAATTTGCCCGCGCGGGCGCCCCGGCCGAATT
GCTCGCCATCGTGCGCACGA

Product: phycocyanobilin lyase alpha subunit

Products: NA

Alternate protein names: Phycocyanin operon protein CpcE [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTLITPDTSLTVEEAVEQLRGEDLSQRYYAAWYLGYLEDPRAVEALVAALADESDRTEMGGYPLRRKAAESLGRIGEARA
VPSLVEILGCEDYYVREAAAWSLARIGDALAVEPLVALLGQGGSQPYEAIIEALGDLRVHRAVPLIQPFLQERSERIRYA
AARSLFQLTGEVALIDILLGGLASADSHIRRAALFDLADTGYLPAAVKIVHADVTATLKLLALKQLADVQTTDAAAADVL
PFIDSIL

Sequences:

>Translated_247_residues
MTLITPDTSLTVEEAVEQLRGEDLSQRYYAAWYLGYLEDPRAVEALVAALADESDRTEMGGYPLRRKAAESLGRIGEARA
VPSLVEILGCEDYYVREAAAWSLARIGDALAVEPLVALLGQGGSQPYEAIIEALGDLRVHRAVPLIQPFLQERSERIRYA
AARSLFQLTGEVALIDILLGGLASADSHIRRAALFDLADTGYLPAAVKIVHADVTATLKLLALKQLADVQTTDAAAADVL
PFIDSIL
>Mature_246_residues
TLITPDTSLTVEEAVEQLRGEDLSQRYYAAWYLGYLEDPRAVEALVAALADESDRTEMGGYPLRRKAAESLGRIGEARAV
PSLVEILGCEDYYVREAAAWSLARIGDALAVEPLVALLGQGGSQPYEAIIEALGDLRVHRAVPLIQPFLQERSERIRYAA
ARSLFQLTGEVALIDILLGGLASADSHIRRAALFDLADTGYLPAAVKIVHADVTATLKLLALKQLADVQTTDAAAADVLP
FIDSIL

Specific function: Required for the chromophorylation of the CpcA gene product [H]

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 26687; Mature: 26556

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS50077 HEAT_REPEAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLITPDTSLTVEEAVEQLRGEDLSQRYYAAWYLGYLEDPRAVEALVAALADESDRTEMG
CEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHCC
GYPLRRKAAESLGRIGEARAVPSLVEILGCEDYYVREAAAWSLARIGDALAVEPLVALLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QGGSQPYEAIIEALGDLRVHRAVPLIQPFLQERSERIRYAAARSLFQLTGEVALIDILLG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLASADSHIRRAALFDLADTGYLPAAVKIVHADVTATLKLLALKQLADVQTTDAAAADVL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
PFIDSIL
HHHHHCC
>Mature Secondary Structure 
TLITPDTSLTVEEAVEQLRGEDLSQRYYAAWYLGYLEDPRAVEALVAALADESDRTEMG
EEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHCC
GYPLRRKAAESLGRIGEARAVPSLVEILGCEDYYVREAAAWSLARIGDALAVEPLVALLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QGGSQPYEAIIEALGDLRVHRAVPLIQPFLQERSERIRYAAARSLFQLTGEVALIDILLG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLASADSHIRRAALFDLADTGYLPAAVKIVHADVTATLKLLALKQLADVQTTDAAAADVL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
PFIDSIL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]