Click here to switch to the map view.

The map label for this gene is ycf84 [C]

Identifier: 37520500

GI number: 37520500

Start: 986638

End: 987801

Strand: Direct

Name: ycf84 [C]

Synonym: gvip124

Alternate gene names: 37520500

Gene position: 986638-987801 (Clockwise)

Preceding gene: 37520499

Following gene: 37520501

Centisome position: 21.18

GC content: 60.74

Gene sequence:

>1164_bases
TTGAAGACATTTGCCGAGGCAAGGTCGCGCTTTTCGCTGCCGGGGCTGACGATTATGGACCGCTACCTGGCAAGCGAACT
GGTTTTGCCGTTTTTGTTCGGTGTGGCGGCCTTCGCCTCGATCGGCATGGCGATCGGATCGCTCTTTGAACTGGTCCGGC
TCATTTCCGAAAACGGCCTGCCGCTCACCACCGCGCTGCAGGTCTTCTTGCTGCGCATGCCGCAGATCATCACCTACACC
TTCCCGATGTCGGTGCTCTTTGCGACGCTCCTGGCCTACGGGCGTCTGTCGGGGGATCTGGAGATCACGGCGCTGCAGGC
GAGCGGCGTGAGTATCCTGCGCGTCGTCGTTCCCACGCTGCTGCTCAGCGTCATAGTCAGCGTCATTACCTTTTTCTTCA
ACGAAGTGGTGGTCCCCACCGCCAACCAGGAGGCGAGCACCACCCTGGCGCGGGCGATTGGCGGGGGCGACCGGCCGCGA
TTTACTAAGGACAACATTCTCTATCCCGAGTACAACTGGGTGCCGGGCAAGGCCGGCGAGCGCGAATACGCCCTCATTCG
GCTGTTTTATGCCCGCCGCTACAGCGACGGGATCATGTACGGGCTGACGATTCTCGACTACAGCCAGGAAAACCTCAACC
AGGTGATCACCGCCGATTCAGCCTACTTCGATCCGAAGACCGACGCCTGGCGTTTTCGCAACGGCACCAGCTATCTGATC
GGCAACGACGGCACTTACCGCAATATTCTTCAGTTTCAAGAGCAACAGGTCAAAATCAGCGAAGATCCGCTCAAGTTCGC
CCAGGAAGTGCGCCGGCCGGAGGAGATGACCACCGTCGAACTGCGCCGCTATATCGAACTGGCCCAGAACGCCCGCCAGG
AAATTCGGGGGCTGCTCGTCAGTCTCTACCAGAAGTACGCCATTCCGAGCGTCTGTTTTGCCTTTGCGCTGGTGGGTGCC
CCGTTGGGCCTGCGCCGCCAGCGCACCAGCAACGCCCTGGGATTGGGCCTCAGCATCCTGATCATCTTCAGTTACTACAT
TTTTCTATTCATCGCCCAGGCCCTGGGCCAGACGGGCGTGCTGCCGCCCTGGCTCGGAGCCTGGCTGCCGGCGCTGATTA
CGATGGCCGTGGGTGCCTACCTGCTCTGGCGGGCCAACCAGTAA

Upstream 100 bases:

>100_bases
TGCCCAGGGTGATCCGCTCGACGATGAAACATCTTTGGATCCGGTTTTTGAAAGAACCCCTGGCCGGCGGCTTTACCCGG
GCCGAGCGGAGAGCACCCCT

Downstream 100 bases:

>100_bases
CCGGTGGTGCCGAAGACTGGCGCTTGGGCCGCGAGGCGGGATAATCGTAAAGAAGCATCACAAGGACGAGCGTGAAGGTA
TTGTTTGCGGCGGCGGAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: Permease; Permease YjgP/YjgQ; Permease YjgP/YjgQ Family; YjgP/YjgQ Family Protein; Permease Yjgp/Yjgq Family Protein; Unclassified ABC-Type Transport System Permease; YjgP/YjgQ Family Permease; YjgP/YjgQ Permease; Permease Family Protein; YjgP/YjgQ Permease Superfamily; YjgP/YjgQ Family Membrane Protein

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKTFAEARSRFSLPGLTIMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGLPLTTALQVFLLRMPQIITYT
FPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTLLLSVIVSVITFFFNEVVVPTANQEASTTLARAIGGGDRPR
FTKDNILYPEYNWVPGKAGEREYALIRLFYARRYSDGIMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLI
GNDGTYRNILQFQEQQVKISEDPLKFAQEVRRPEEMTTVELRRYIELAQNARQEIRGLLVSLYQKYAIPSVCFAFALVGA
PLGLRRQRTSNALGLGLSILIIFSYYIFLFIAQALGQTGVLPPWLGAWLPALITMAVGAYLLWRANQ

Sequences:

>Translated_387_residues
MKTFAEARSRFSLPGLTIMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGLPLTTALQVFLLRMPQIITYT
FPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTLLLSVIVSVITFFFNEVVVPTANQEASTTLARAIGGGDRPR
FTKDNILYPEYNWVPGKAGEREYALIRLFYARRYSDGIMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLI
GNDGTYRNILQFQEQQVKISEDPLKFAQEVRRPEEMTTVELRRYIELAQNARQEIRGLLVSLYQKYAIPSVCFAFALVGA
PLGLRRQRTSNALGLGLSILIIFSYYIFLFIAQALGQTGVLPPWLGAWLPALITMAVGAYLLWRANQ
>Mature_387_residues
MKTFAEARSRFSLPGLTIMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGLPLTTALQVFLLRMPQIITYT
FPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTLLLSVIVSVITFFFNEVVVPTANQEASTTLARAIGGGDRPR
FTKDNILYPEYNWVPGKAGEREYALIRLFYARRYSDGIMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLI
GNDGTYRNILQFQEQQVKISEDPLKFAQEVRRPEEMTTVELRRYIELAQNARQEIRGLLVSLYQKYAIPSVCFAFALVGA
PLGLRRQRTSNALGLGLSILIIFSYYIFLFIAQALGQTGVLPPWLGAWLPALITMAVGAYLLWRANQ

Specific function: Unknown

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43316; Mature: 43316

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFAEARSRFSLPGLTIMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGL
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLTTALQVFLLRMPQIITYTFPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
LLSVIVSVITFFFNEVVVPTANQEASTTLARAIGGGDRPRFTKDNILYPEYNWVPGKAGE
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCC
REYALIRLFYARRYSDGIMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLI
CHHHHHHHHHHHHHCCCCEEEHHEEECCHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEE
GNDGTYRNILQFQEQQVKISEDPLKFAQEVRRPEEMTTVELRRYIELAQNARQEIRGLLV
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYQKYAIPSVCFAFALVGAPLGLRRQRTSNALGLGLSILIIFSYYIFLFIAQALGQTGV
HHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPPWLGAWLPALITMAVGAYLLWRANQ
CCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTFAEARSRFSLPGLTIMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGL
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLTTALQVFLLRMPQIITYTFPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
LLSVIVSVITFFFNEVVVPTANQEASTTLARAIGGGDRPRFTKDNILYPEYNWVPGKAGE
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCC
REYALIRLFYARRYSDGIMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLI
CHHHHHHHHHHHHHCCCCEEEHHEEECCHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEE
GNDGTYRNILQFQEQQVKISEDPLKFAQEVRRPEEMTTVELRRYIELAQNARQEIRGLLV
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYQKYAIPSVCFAFALVGAPLGLRRQRTSNALGLGLSILIIFSYYIFLFIAQALGQTGV
HHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPPWLGAWLPALITMAVGAYLLWRANQ
CCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA