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The map label for this gene is dapF [H]

Identifier: 37520384

GI number: 37520384

Start: 871027

End: 871878

Strand: Reverse

Name: dapF [H]

Synonym: gvip093

Alternate gene names: 37520384

Gene position: 871878-871027 (Counterclockwise)

Preceding gene: 37520387

Following gene: 37520383

Centisome position: 18.71

GC content: 66.43

Gene sequence:

>852_bases
ATGACTTTCGCCCCCGGCACGCTTTCTTTTGTCAAGTACGAGGGCCTCGGCAACGACTTTGTACTCATCGACAACCGCAC
CGCAGCCGAACCGGTGCTCTCCGCCGAAGAGGCCGCGGCGGTGTGCGACCGGCACTTCGGGGTCGGGGCGGACGGGGTGA
TCTTTTTGCTGAGCGCCGAGACGGGTGCCGACTTTCGCATGCGCATCTACAACAACGACGGCTCCGAGGCGCAGATGTGC
GGCAACGGCATCCGCTGCCTGGCCCACTTTGCCCGCGAACTGGGGATGGGCGGGACGGGAAGCGGCTACCGGGTGGAGAC
CGGGGCGGGCCTGTTGAATATTGATCTGTTGGCCGACGGCCGGGTGAGAGTAGACATGGGACCGCCCCACCTGCTGGCGG
ATGAGATCCCGACCACCCTCGCCCCGGCGGACCAAAAAGCGGTGGCGGCGTCCATCCCCGTGGGCGGGGTCGATTGGCGG
GTCACCTGCGTCAACATGGGCAACCCCCACGCCGTGGTGTTCGTCGACGAATTGGCCACGGTGGATCTGCACCGCTTCGG
TCCGCTTTTTGAGCGCGATCGCCACTTTCCTGAGCGCGTCAACACCCATTTTGCCGAGGTGATCAGTCCCACCCACCTGC
GGGTCAAAGCTTGGGAGCGCGGTGCCGGTCCCACCCTCGCCTGCGGCACCGGCGCGTGCGCGGTGCTGGTGGCGGCGGTG
CTCAACGGCCTTTCCCACACCGAAGCGACCGTCGAACTGCCCGGCGGGCCAATCGAGATCCGCTGGGACGGCGCCACGAA
CCATTTGCTGATGACCGGTCCGGCCCGCAAGGTCTTCAGCGGCCTGCTGTAA

Upstream 100 bases:

>100_bases
GGATCGGGCCAGCCTGCTGAAAGGGATTCCACCGGGCGGTTCCGTATTTGTCCCCGCCCGAATGGCATGATAGAAAGCGC
AGTCTTCATCCCAACAGGCC

Downstream 100 bases:

>100_bases
GGGCTTCTTGAGCGGTTAACCTGAAAGCCGGAGTCGACTGAACCATGCATGGCTACCCGGTTGCGCACCCAGTATCAGCT
TGCCTTTGCGCTGGCGGCCC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTFAPGTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLLSAETGADFRMRIYNNDGSEAQMC
GNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRVDMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWR
VTCVNMGNPHAVVFVDELATVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAAV
LNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL

Sequences:

>Translated_283_residues
MTFAPGTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLLSAETGADFRMRIYNNDGSEAQMC
GNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRVDMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWR
VTCVNMGNPHAVVFVDELATVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAAV
LNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL
>Mature_282_residues
TFAPGTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLLSAETGADFRMRIYNNDGSEAQMCG
NGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRVDMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWRV
TCVNMGNPHAVVFVDELATVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAAVL
NGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=279, Percent_Identity=38.3512544802867, Blast_Score=191, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 29998; Mature: 29866

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFAPGTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLLSAE
CCCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
TGADFRMRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADG
CCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECC
RVRVDMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWRVTCVNMGNPHAVVFVDELAT
EEEEECCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCE
VDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAAV
ECHHHCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHH
LNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL
HCCCCCCCEEEECCCCEEEEEECCCCCEEEEECCHHHHHHCCC
>Mature Secondary Structure 
TFAPGTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLLSAE
CCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
TGADFRMRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADG
CCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECC
RVRVDMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWRVTCVNMGNPHAVVFVDELAT
EEEEECCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCE
VDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAAV
ECHHHCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHH
LNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL
HCCCCCCCEEEECCCCEEEEEECCCCCEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA