Click here to switch to the map view.

The map label for this gene is yrrC [H]

Identifier: 37520198

GI number: 37520198

Start: 671339

End: 673576

Strand: Direct

Name: yrrC [H]

Synonym: glr0629

Alternate gene names: 37520198

Gene position: 671339-673576 (Clockwise)

Preceding gene: 37520197

Following gene: 37520199

Centisome position: 14.41

GC content: 65.28

Gene sequence:

>2238_bases
ATGGGACTGGCGATGCAGCGATCGATCGAAGGGCTGGCAGGCGGGGAGCGCGACGAGATGCTCCAGGGTGTCGTCGAGCG
CGTCACCTTTCACAACCCCCAGAACGGCTACACGATCGCCCGGGTAGCGGTGCGCGGACTGGCGGATCTGGCGACGGTGG
TGGGCAATTTTGCTCAGCTGCAGCCGGGCCAGACGATGCAATTTTGGGGTTGCTGGAAAGATCATCCCCAGTACGGTCCC
CAGTTTCTGGCCCATCGCCACGAGGAGACCCGCCCCGCCACCATTGGCGGCCTCGAAAAATATCTCGGATCGGGCCTGAT
CAAGGGCGTGGGGCCGGTGACCGCCCGGCGCATCGTTGCTCACTTCGGCCTGGCGTCTCTCGAAATTATCGAAAGCGACT
GCAGCCGGCTCGCCGAGGTGCCGGGGGTGGGTGCCCACCGCATCCGGCTCATTCAGGCGGCCTGGCAGGAGCAAAAGGCG
ATCAAAGAAGTGATGCTCTTTTTGCAGTCGCACCAGGTGAACACCACCCACGCCGTCAAAATTTTCAAGACTTACGGCGA
CGAGGCGATCGAGCGGGTGCGCACCAACCCCTACCAGCTGGCCCAGGACATCTGGGGCATCGGCTTTCGCACCGCCGATC
AGATCGCTCAGAACCTTGGGGTGGCCCCCGACAGCGACGAGCGTCTCAAAGCCGGGATCCTCTACGCGCTCATCACCGCC
ACCGAGGAGGGGCACTGCTACTTGCCGCTGGAGGAGATGCTCGATCAGGCCGTGGCACTGCTGCGCCTGGAGGAAGTGGC
CGAATCGGTCCGGCCGCGCCTGGTTGAGATGGCCCGCGCGTTGGTGCGCGAAGGGCAGATCAAAGCGGAGCGGCCGTCAG
GCGGGGCGGAGGCGCCCGTGGTCTGCTTCCAGCCGTCGCTGTGGCAGTGCGAGGTGGGCCTGGCGCGGCGGCTGTGCGAG
CGCCCCCCTGCCCCGGTGGACACCGGCCGCGTCGAGGCGTGGCTCGAAAGATACACCCACCACCACGGCCTGCAACTTTC
TGCCGAGCAGCGCCAGGCGGTTATGCTGGCCGCCCGCGAACCGGTGACCGTCCTTACCGGCGGGCCGGGAACGGGCAAAA
CGCTCACCACCCGGGCGGTCGCCGCTCTGTGGAAGGCGATGGGCAAAAAGGTCCTGCTCGCTTCTCCCACCGGCCGGGCC
GCCCAGCGCCTGGCGGAGGTGAGCGGCCAGGAAGCGAAAACCATTCATCGGTTGCTCGAATTCGATCCGAGCACGATGGG
CTTCAAGCGCTGTGCCGAAAATCCCCTCGACGCCCAAGCGTTTGTGATCGACGAAGCTTCGATGATCGACGTGGTGCTCG
CCTACAACCTGCTCAAGGCCATCCCTGCGGGGGCGCAGGTGCTGCTGGTGGGCGACCAGGACCAGTTGCCCAGCGTCGGC
CCCGGCAACGTGCTGGCCGATCTGGTGCGCTCACCGGCCATCCCCACCGCCCGGCTCACCCAGGTCTTTCGCCAGGCCGC
CGCGAGCCGCATCATCACCAACGCCCACCGCATCAACTCGGGCCAGATGCCGGATCTGGCGGGCGAAGGGTCCGACTGCC
TGTTTATCGAAGCCCACGAGCCTGCGCAGGTGGTCGAGCGCGTTCGCGAATTCGTCGTGCAAGAGTTGCCCCGGCGGGGA
TTTCGCTCCCTGGCCGATGCCCAGGTGCTCTGCCCGATGAACCGGGGACTGGTGGGCTCCAACCACCTCAACACCGTCCT
GCAGGAAGCCCTCAACCCCCTGCCTCCCGACGGCGGCGAGCTCGATCGCGGCAGGCGACTATTTCGAGTGGGCGACCGGG
TGATTCAGCTGCGCAACAATTACGACCTGGGGGTCTTCAACGGCGATCTGGGCACGATCGCGGGGATTGACTTTGAGAAC
CAAAAGCTTCAGGTGCAATTTTTCGAGCGCACCATGGGCTACGACTTCGCCGATTTGAACGAACTGTCGCTTGCCTACGC
GATCAGCATCCACCGCAGCCAGGGCAGCGAGTATCCGGTGGCGATTATCCCGGTGCACACCCAGCACTTTCCGATGCTCA
GCCGCAACCTGCTCTATACCGGTCTGACCCGGGCACGCAAACTGGCGGTGCTGGTGGGTACCCGCAAGGCCATTGCCATC
GCCGTGCGCGAAGTGAAGGCCATGCAGCGCTACACGCGGTTGTCCGAAAGGCTCTCGCCTTTGCAGGCAGACGAGTAG

Upstream 100 bases:

>100_bases
TATATCTGGGAGCACCGCCGCCACCGCCAACTGCGCGAGGTCGTGGTGCACATCGCCGGAAATTAAGGCCGGATGTCCTC
AAGCGGTTAAAATTGGGGGC

Downstream 100 bases:

>100_bases
CAGCCCGCAGCCAGGACGGCTGTATACTAAACTGTGCACAGCTTAGTGGATTATGCAGGGACCGACGGTCAGAATCAGCG
CCTCAGCGCACCGGACATTG

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 745; Mature: 744

Protein sequence:

>745_residues
MGLAMQRSIEGLAGGERDEMLQGVVERVTFHNPQNGYTIARVAVRGLADLATVVGNFAQLQPGQTMQFWGCWKDHPQYGP
QFLAHRHEETRPATIGGLEKYLGSGLIKGVGPVTARRIVAHFGLASLEIIESDCSRLAEVPGVGAHRIRLIQAAWQEQKA
IKEVMLFLQSHQVNTTHAVKIFKTYGDEAIERVRTNPYQLAQDIWGIGFRTADQIAQNLGVAPDSDERLKAGILYALITA
TEEGHCYLPLEEMLDQAVALLRLEEVAESVRPRLVEMARALVREGQIKAERPSGGAEAPVVCFQPSLWQCEVGLARRLCE
RPPAPVDTGRVEAWLERYTHHHGLQLSAEQRQAVMLAAREPVTVLTGGPGTGKTLTTRAVAALWKAMGKKVLLASPTGRA
AQRLAEVSGQEAKTIHRLLEFDPSTMGFKRCAENPLDAQAFVIDEASMIDVVLAYNLLKAIPAGAQVLLVGDQDQLPSVG
PGNVLADLVRSPAIPTARLTQVFRQAAASRIITNAHRINSGQMPDLAGEGSDCLFIEAHEPAQVVERVREFVVQELPRRG
FRSLADAQVLCPMNRGLVGSNHLNTVLQEALNPLPPDGGELDRGRRLFRVGDRVIQLRNNYDLGVFNGDLGTIAGIDFEN
QKLQVQFFERTMGYDFADLNELSLAYAISIHRSQGSEYPVAIIPVHTQHFPMLSRNLLYTGLTRARKLAVLVGTRKAIAI
AVREVKAMQRYTRLSERLSPLQADE

Sequences:

>Translated_745_residues
MGLAMQRSIEGLAGGERDEMLQGVVERVTFHNPQNGYTIARVAVRGLADLATVVGNFAQLQPGQTMQFWGCWKDHPQYGP
QFLAHRHEETRPATIGGLEKYLGSGLIKGVGPVTARRIVAHFGLASLEIIESDCSRLAEVPGVGAHRIRLIQAAWQEQKA
IKEVMLFLQSHQVNTTHAVKIFKTYGDEAIERVRTNPYQLAQDIWGIGFRTADQIAQNLGVAPDSDERLKAGILYALITA
TEEGHCYLPLEEMLDQAVALLRLEEVAESVRPRLVEMARALVREGQIKAERPSGGAEAPVVCFQPSLWQCEVGLARRLCE
RPPAPVDTGRVEAWLERYTHHHGLQLSAEQRQAVMLAAREPVTVLTGGPGTGKTLTTRAVAALWKAMGKKVLLASPTGRA
AQRLAEVSGQEAKTIHRLLEFDPSTMGFKRCAENPLDAQAFVIDEASMIDVVLAYNLLKAIPAGAQVLLVGDQDQLPSVG
PGNVLADLVRSPAIPTARLTQVFRQAAASRIITNAHRINSGQMPDLAGEGSDCLFIEAHEPAQVVERVREFVVQELPRRG
FRSLADAQVLCPMNRGLVGSNHLNTVLQEALNPLPPDGGELDRGRRLFRVGDRVIQLRNNYDLGVFNGDLGTIAGIDFEN
QKLQVQFFERTMGYDFADLNELSLAYAISIHRSQGSEYPVAIIPVHTQHFPMLSRNLLYTGLTRARKLAVLVGTRKAIAI
AVREVKAMQRYTRLSERLSPLQADE
>Mature_744_residues
GLAMQRSIEGLAGGERDEMLQGVVERVTFHNPQNGYTIARVAVRGLADLATVVGNFAQLQPGQTMQFWGCWKDHPQYGPQ
FLAHRHEETRPATIGGLEKYLGSGLIKGVGPVTARRIVAHFGLASLEIIESDCSRLAEVPGVGAHRIRLIQAAWQEQKAI
KEVMLFLQSHQVNTTHAVKIFKTYGDEAIERVRTNPYQLAQDIWGIGFRTADQIAQNLGVAPDSDERLKAGILYALITAT
EEGHCYLPLEEMLDQAVALLRLEEVAESVRPRLVEMARALVREGQIKAERPSGGAEAPVVCFQPSLWQCEVGLARRLCER
PPAPVDTGRVEAWLERYTHHHGLQLSAEQRQAVMLAAREPVTVLTGGPGTGKTLTTRAVAALWKAMGKKVLLASPTGRAA
QRLAEVSGQEAKTIHRLLEFDPSTMGFKRCAENPLDAQAFVIDEASMIDVVLAYNLLKAIPAGAQVLLVGDQDQLPSVGP
GNVLADLVRSPAIPTARLTQVFRQAAASRIITNAHRINSGQMPDLAGEGSDCLFIEAHEPAQVVERVREFVVQELPRRGF
RSLADAQVLCPMNRGLVGSNHLNTVLQEALNPLPPDGGELDRGRRLFRVGDRVIQLRNNYDLGVFNGDLGTIAGIDFENQ
KLQVQFFERTMGYDFADLNELSLAYAISIHRSQGSEYPVAIIPVHTQHFPMLSRNLLYTGLTRARKLAVLVGTRKAIAIA
VREVKAMQRYTRLSERLSPLQADE

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=117, Percent_Identity=39.3162393162393, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 81929; Mature: 81798

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLAMQRSIEGLAGGERDEMLQGVVERVTFHNPQNGYTIARVAVRGLADLATVVGNFAQL
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
QPGQTMQFWGCWKDHPQYGPQFLAHRHEETRPATIGGLEKYLGSGLIKGVGPVTARRIVA
CCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHH
HFGLASLEIIESDCSRLAEVPGVGAHRIRLIQAAWQEQKAIKEVMLFLQSHQVNTTHAVK
HHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IFKTYGDEAIERVRTNPYQLAQDIWGIGFRTADQIAQNLGVAPDSDERLKAGILYALITA
HHHHHCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHEEEEEE
TEEGHCYLPLEEMLDQAVALLRLEEVAESVRPRLVEMARALVREGQIKAERPSGGAEAPV
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCE
VCFQPSLWQCEVGLARRLCERPPAPVDTGRVEAWLERYTHHHGLQLSAEQRQAVMLAARE
EEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECHHHHHEEEEECCC
PVTVLTGGPGTGKTLTTRAVAALWKAMGKKVLLASPTGRAAQRLAEVSGQEAKTIHRLLE
CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
FDPSTMGFKRCAENPLDAQAFVIDEASMIDVVLAYNLLKAIPAGAQVLLVGDQDQLPSVG
CCCCHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
PGNVLADLVRSPAIPTARLTQVFRQAAASRIITNAHRINSGQMPDLAGEGSDCLFIEAHE
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
PAQVVERVREFVVQELPRRGFRSLADAQVLCPMNRGLVGSNHLNTVLQEALNPLPPDGGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
LDRGRRLFRVGDRVIQLRNNYDLGVFNGDLGTIAGIDFENQKLQVQFFERTMGYDFADLN
CHHHHHHHHHHHHHHEECCCCCEEEEECCCCCEECCCCCCCEEEHEEHHHHHCCCCCCHH
ELSLAYAISIHRSQGSEYPVAIIPVHTQHFPMLSRNLLYTGLTRARKLAVLVGTRKAIAI
HHHEEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHEEHEECCCHHHHH
AVREVKAMQRYTRLSERLSPLQADE
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GLAMQRSIEGLAGGERDEMLQGVVERVTFHNPQNGYTIARVAVRGLADLATVVGNFAQL
CCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
QPGQTMQFWGCWKDHPQYGPQFLAHRHEETRPATIGGLEKYLGSGLIKGVGPVTARRIVA
CCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHH
HFGLASLEIIESDCSRLAEVPGVGAHRIRLIQAAWQEQKAIKEVMLFLQSHQVNTTHAVK
HHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IFKTYGDEAIERVRTNPYQLAQDIWGIGFRTADQIAQNLGVAPDSDERLKAGILYALITA
HHHHHCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHEEEEEE
TEEGHCYLPLEEMLDQAVALLRLEEVAESVRPRLVEMARALVREGQIKAERPSGGAEAPV
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCE
VCFQPSLWQCEVGLARRLCERPPAPVDTGRVEAWLERYTHHHGLQLSAEQRQAVMLAARE
EEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECHHHHHEEEEECCC
PVTVLTGGPGTGKTLTTRAVAALWKAMGKKVLLASPTGRAAQRLAEVSGQEAKTIHRLLE
CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
FDPSTMGFKRCAENPLDAQAFVIDEASMIDVVLAYNLLKAIPAGAQVLLVGDQDQLPSVG
CCCCHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
PGNVLADLVRSPAIPTARLTQVFRQAAASRIITNAHRINSGQMPDLAGEGSDCLFIEAHE
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
PAQVVERVREFVVQELPRRGFRSLADAQVLCPMNRGLVGSNHLNTVLQEALNPLPPDGGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
LDRGRRLFRVGDRVIQLRNNYDLGVFNGDLGTIAGIDFENQKLQVQFFERTMGYDFADLN
CHHHHHHHHHHHHHHEECCCCCEEEEECCCCCEECCCCCCCEEEHEEHHHHHCCCCCCHH
ELSLAYAISIHRSQGSEYPVAIIPVHTQHFPMLSRNLLYTGLTRARKLAVLVGTRKAIAI
HHHEEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHEEHEECCCHHHHH
AVREVKAMQRYTRLSERLSPLQADE
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]