Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 37519986

GI number: 37519986

Start: 437995

End: 439530

Strand: Reverse

Name: ybbD [H]

Synonym: gll0417

Alternate gene names: 37519986

Gene position: 439530-437995 (Counterclockwise)

Preceding gene: 37519990

Following gene: 37519985

Centisome position: 9.43

GC content: 69.27

Gene sequence:

>1536_bases
ATGGCCAATTTACCGGGCGCCGCACAACTGAACTTAAAAGAAGCGATCGGCCAGTTGTTGGTGCCGCGCATCTCCGGGTT
TTTGCTGGATCACCAGCGGCTCTATCCGCAGTGGGAGCTGGACGCAGCCCGCCTCGAAGCGGCGATAGTCACCCACGGCG
TCGGCGGTGTGCTCGTCTACGGCGGCAGCCTGGGTGACACGTTCCTCAAAATTCAGGCGCTGCAGCAGCAGGCGGCCCTG
CCGCTTCTAGTCGCCGCCGATCTGGAGGCCGGGTGCGGCCAGCACATCCGCGGCGCCACGGTGCTGCCGGTGGCCCGTGC
CCTGGGGGCCGCGGCAGAAGCCGACTACGCCTACCACTGCGGGGCGATCACCGCCCGGGAGGCGCGCTCGGTGGGCATCA
ACTGGGTGCTCGCCCCCTGTCTTGATGTGATGAGCAATCCCCGCAATCCGGTCATTGGTTTACGCTCCTTCGGCGAAGAC
CCACGGGAGGTGGCCCGCCTGGGGGTGGCCTTTGCCGCCGGATTGCGCGACGGCGGGGTGCTCTCCGCTATCAAACATTT
TCCCGGCCACGGCGACGTCGAGGTCGATTCGCACCTGGCGCTGCCGGTGCTCGGGCGCGGACGCGACAGGCTCGAAGCGG
AGGACTGGCTGCCCTTTCGGGCGGTCCTGGCGGCGGGGGCCGACAGCTTGATGAGCGCCCACCTGCGTGTGCCCGCCCTC
GATCCCGAATGGCCCGCCACCCTCTCGCGGCGGATCCTCACCGAGATCGTCCGCGAAGGGTGGGGCTACACGGGCATCAT
CGTCACCGACGCCCTCAACATGGGGGCGATCGCCGGTTGGCCCGCCCCGGCGGTGCGGGCCCTGCAAGCCGGTGCGGACG
TGATCATGATGCCCGAGAGCGTGCCCGACACGGTTGATCTAATCGTCTCGGCGGTGCGGCGGGGATTGCTCAGCGAAGAG
CGGCTCTACGCCTCGGTGGAGCGGGTGCTCGCCGCCAAGGCGCGCCTGGCGCCCCCATCCGCTTCGCCCCTCGCCATCGA
GCAGCGCTCCGGCCAGGCCCTGGAGCGGATGATCGCCAAGGCGGCCGTGACCGTCGAGCGCGACCGGGCCGGGCTGTTGC
CGGTTCCCTGTCTGAAGCCGACCCTCAACATCCTGGTGGTCGACCGCTGCCTGGACGGCGCGGTCGCAGCCGATTCGCCC
ATCCTCGAGCGCCGCGAACTGGGGCCGCACTACGAGACCCACTGGCTGGAGGCAGCCTCGGGTGAGGAGTACCTGGCGTT
TTTGGGCGAGCGCGCCGCTGCCCATCGGCGCACGCTGGTGCAGGTGCTCACACCGGTGCGCGCCTACCGGGGAACGGCCG
GGGTGCACCCGGCCGCAGAGCACTTCTTGCAAAGCCTTGCGGGGGAGCGCACGATCCTGGTGAGCTACACCAATCCCTAC
CTTGGACGGCAGTTCGAGCAGCTCTCGACGGTGCTCAACGCCTTCAACAACGGCCCCGCCAGCCACGCGGCGGTGCTGGA
GCGCCTGGAGAGCTAG

Upstream 100 bases:

>100_bases
GCCACACGGCGCCTTCTCCCCTCGCGTGCCTTCCGCCCCTATTGTGGCAACGCTCCCCTTGGGACACAATCGATGGGCCG
TCGATGGGTCGCAGGTCGGA

Downstream 100 bases:

>100_bases
GGTCCGGTACAATTTCTGTGCAGCAAACCGCAAGCCATGTCACAGTTCGACCTCGACGCTTACCTGCGCCAGTGCCGCTC
GCAGGTGGAAGCCGCCCTCG

Product: sugar hydrolase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MANLPGAAQLNLKEAIGQLLVPRISGFLLDHQRLYPQWELDAARLEAAIVTHGVGGVLVYGGSLGDTFLKIQALQQQAAL
PLLVAADLEAGCGQHIRGATVLPVARALGAAAEADYAYHCGAITAREARSVGINWVLAPCLDVMSNPRNPVIGLRSFGED
PREVARLGVAFAAGLRDGGVLSAIKHFPGHGDVEVDSHLALPVLGRGRDRLEAEDWLPFRAVLAAGADSLMSAHLRVPAL
DPEWPATLSRRILTEIVREGWGYTGIIVTDALNMGAIAGWPAPAVRALQAGADVIMMPESVPDTVDLIVSAVRRGLLSEE
RLYASVERVLAAKARLAPPSASPLAIEQRSGQALERMIAKAAVTVERDRAGLLPVPCLKPTLNILVVDRCLDGAVAADSP
ILERRELGPHYETHWLEAASGEEYLAFLGERAAAHRRTLVQVLTPVRAYRGTAGVHPAAEHFLQSLAGERTILVSYTNPY
LGRQFEQLSTVLNAFNNGPASHAAVLERLES

Sequences:

>Translated_511_residues
MANLPGAAQLNLKEAIGQLLVPRISGFLLDHQRLYPQWELDAARLEAAIVTHGVGGVLVYGGSLGDTFLKIQALQQQAAL
PLLVAADLEAGCGQHIRGATVLPVARALGAAAEADYAYHCGAITAREARSVGINWVLAPCLDVMSNPRNPVIGLRSFGED
PREVARLGVAFAAGLRDGGVLSAIKHFPGHGDVEVDSHLALPVLGRGRDRLEAEDWLPFRAVLAAGADSLMSAHLRVPAL
DPEWPATLSRRILTEIVREGWGYTGIIVTDALNMGAIAGWPAPAVRALQAGADVIMMPESVPDTVDLIVSAVRRGLLSEE
RLYASVERVLAAKARLAPPSASPLAIEQRSGQALERMIAKAAVTVERDRAGLLPVPCLKPTLNILVVDRCLDGAVAADSP
ILERRELGPHYETHWLEAASGEEYLAFLGERAAAHRRTLVQVLTPVRAYRGTAGVHPAAEHFLQSLAGERTILVSYTNPY
LGRQFEQLSTVLNAFNNGPASHAAVLERLES
>Mature_510_residues
ANLPGAAQLNLKEAIGQLLVPRISGFLLDHQRLYPQWELDAARLEAAIVTHGVGGVLVYGGSLGDTFLKIQALQQQAALP
LLVAADLEAGCGQHIRGATVLPVARALGAAAEADYAYHCGAITAREARSVGINWVLAPCLDVMSNPRNPVIGLRSFGEDP
REVARLGVAFAAGLRDGGVLSAIKHFPGHGDVEVDSHLALPVLGRGRDRLEAEDWLPFRAVLAAGADSLMSAHLRVPALD
PEWPATLSRRILTEIVREGWGYTGIIVTDALNMGAIAGWPAPAVRALQAGADVIMMPESVPDTVDLIVSAVRRGLLSEER
LYASVERVLAAKARLAPPSASPLAIEQRSGQALERMIAKAAVTVERDRAGLLPVPCLKPTLNILVVDRCLDGAVAADSPI
LERRELGPHYETHWLEAASGEEYLAFLGERAAAHRRTLVQVLTPVRAYRGTAGVHPAAEHFLQSLAGERTILVSYTNPYL
GRQFEQLSTVLNAFNNGPASHAAVLERLES

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=273, Percent_Identity=31.8681318681319, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788453, Length=349, Percent_Identity=26.0744985673352, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.21

Molecular weight: Translated: 54593; Mature: 54462

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLPGAAQLNLKEAIGQLLVPRISGFLLDHQRLYPQWELDAARLEAAIVTHGVGGVLVY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEE
GGSLGDTFLKIQALQQQAALPLLVAADLEAGCGQHIRGATVLPVARALGAAAEADYAYHC
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHCCCCEEEC
GAITAREARSVGINWVLAPCLDVMSNPRNPVIGLRSFGEDPREVARLGVAFAAGLRDGGV
CCCCHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCHH
LSAIKHFPGHGDVEVDSHLALPVLGRGRDRLEAEDWLPFRAVLAAGADSLMSAHLRVPAL
HHHHHHCCCCCCEEECCCEECCCCCCCCCCCCHHHCCHHHHHHHHCHHHHHHHHCCCCCC
DPEWPATLSRRILTEIVREGWGYTGIIVTDALNMGAIAGWPAPAVRALQAGADVIMMPES
CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEECCCC
VPDTVDLIVSAVRRGLLSEERLYASVERVLAAKARLAPPSASPLAIEQRSGQALERMIAK
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHH
AAVTVERDRAGLLPVPCLKPTLNILVVDRCLDGAVAADSPILERRELGPHYETHWLEAAS
HHHEEECCCCCCCCCCCCCCCHHHEEEEHHHCCCCCCCCCHHHHHHCCCCHHHHHHCCCC
GEEYLAFLGERAAAHRRTLVQVLTPVRAYRGTAGVHPAAEHFLQSLAGERTILVSYTNPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCH
LGRQFEQLSTVLNAFNNGPASHAAVLERLES
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ANLPGAAQLNLKEAIGQLLVPRISGFLLDHQRLYPQWELDAARLEAAIVTHGVGGVLVY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEE
GGSLGDTFLKIQALQQQAALPLLVAADLEAGCGQHIRGATVLPVARALGAAAEADYAYHC
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHCCCCEEEC
GAITAREARSVGINWVLAPCLDVMSNPRNPVIGLRSFGEDPREVARLGVAFAAGLRDGGV
CCCCHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCHH
LSAIKHFPGHGDVEVDSHLALPVLGRGRDRLEAEDWLPFRAVLAAGADSLMSAHLRVPAL
HHHHHHCCCCCCEEECCCEECCCCCCCCCCCCHHHCCHHHHHHHHCHHHHHHHHCCCCCC
DPEWPATLSRRILTEIVREGWGYTGIIVTDALNMGAIAGWPAPAVRALQAGADVIMMPES
CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEECCCC
VPDTVDLIVSAVRRGLLSEERLYASVERVLAAKARLAPPSASPLAIEQRSGQALERMIAK
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHH
AAVTVERDRAGLLPVPCLKPTLNILVVDRCLDGAVAADSPILERRELGPHYETHWLEAAS
HHHEEECCCCCCCCCCCCCCCHHHEEEEHHHCCCCCCCCCHHHHHHCCCCHHHHHHCCCC
GEEYLAFLGERAAAHRRTLVQVLTPVRAYRGTAGVHPAAEHFLQSLAGERTILVSYTNPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCH
LGRQFEQLSTVLNAFNNGPASHAAVLERLES
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]