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The map label for this gene is rpl25

Identifier: 37519968

GI number: 37519968

Start: 420977

End: 421612

Strand: Reverse

Name: rpl25

Synonym: gvip034

Alternate gene names: 37519968

Gene position: 421612-420977 (Counterclockwise)

Preceding gene: 37519970

Following gene: 37519966

Centisome position: 9.05

GC content: 61.32

Gene sequence:

>636_bases
ATGACGATACCACTGACGCTCAAACAACGGGCCACGGGCGCCCAGCCGCGGGCGATGCGCCGCGAAGGCCGCATTCCGGC
AGTACTCTATGGTCATCGGGGAACCCAGTCGCTGGCGTTGGAACTTGAACAACGCACCGCTGAAGATTTACTCAAGCGTG
TCACCATCAACAACACCATTTTGCCTTTGAAGGTGGAGCGGGGCTGGTCGGGCGATGTGCTTCTGCGCGAAGTGCAGCAC
GACGCGGTGGGCGGCAAGCTGTTGCACTTGAGCTTTTTTGCGGTCGCGGGCCACGGCAGCATTACCCTCGATTTGCCTTT
GGTGTTTACCGGCGAAGCGGTAGGCGTCAAGATGGACGGCGGTCTGCTCGAAAAGGTACTCACCCAACTGACGGTCAACA
CCCCCCCCACGGACGTGCCTGAGGCGATCGAAGTCGATATTTCGACCATGCAAGTAGGCGACATGCTCTATGTCAAAGAC
CTGGTTTTGCCCCCCGGCATCGAGGTTGTCAACACCCCGGATCTGGTAGTGGCGCACCTGACCCCCTCACCGACCGGCCG
CGCCCTCCAATCGATGGACGCGGCGGAGTCGGCGGTCGAACAACCCGGCGAGCAACCGGCAACGGCTGCCGGGTAA

Upstream 100 bases:

>100_bases
CCAATAGATCGCCGGTTATTTGCAACCCAGGGAGGAAGCGAAGAGCGTGTGCAGTAGGCAACCATTACCATAGAGAACTC
TGTCCTTGAAGGAATTTCCC

Downstream 100 bases:

>100_bases
TCACTCCGGCTGGTGCTCCAGAGCTTGTGGTCGGGGGCGGTCTGGAACCGCGAGCGGTACCCGGCTGGGCTGTCGCTCCG
GCGCGGGTGGTGCCAACAGC

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTIPLTLKQRATGAQPRAMRREGRIPAVLYGHRGTQSLALELEQRTAEDLLKRVTINNTILPLKVERGWSGDVLLREVQH
DAVGGKLLHLSFFAVAGHGSITLDLPLVFTGEAVGVKMDGGLLEKVLTQLTVNTPPTDVPEAIEVDISTMQVGDMLYVKD
LVLPPGIEVVNTPDLVVAHLTPSPTGRALQSMDAAESAVEQPGEQPATAAG

Sequences:

>Translated_211_residues
MTIPLTLKQRATGAQPRAMRREGRIPAVLYGHRGTQSLALELEQRTAEDLLKRVTINNTILPLKVERGWSGDVLLREVQH
DAVGGKLLHLSFFAVAGHGSITLDLPLVFTGEAVGVKMDGGLLEKVLTQLTVNTPPTDVPEAIEVDISTMQVGDMLYVKD
LVLPPGIEVVNTPDLVVAHLTPSPTGRALQSMDAAESAVEQPGEQPATAAG
>Mature_210_residues
TIPLTLKQRATGAQPRAMRREGRIPAVLYGHRGTQSLALELEQRTAEDLLKRVTINNTILPLKVERGWSGDVLLREVQHD
AVGGKLLHLSFFAVAGHGSITLDLPLVFTGEAVGVKMDGGLLEKVLTQLTVNTPPTDVPEAIEVDISTMQVGDMLYVKDL
VLPPGIEVVNTPDLVVAHLTPSPTGRALQSMDAAESAVEQPGEQPATAAG

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_GLOVI (Q7NNL2)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_923345.1
- ProteinModelPortal:   Q7NNL2
- SMR:   Q7NNL2
- GeneID:   2599703
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.399
- HOGENOM:   HBG731986
- OMA:   IARELTI
- ProtClustDB:   PRK05618
- BioCyc:   GVIO251221:GLL0399-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 22534; Mature: 22403

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPLTLKQRATGAQPRAMRREGRIPAVLYGHRGTQSLALELEQRTAEDLLKRVTINNTI
CCCCEECCCCCCCCCCHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
LPLKVERGWSGDVLLREVQHDAVGGKLLHLSFFAVAGHGSITLDLPLVFTGEAVGVKMDG
EEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEEEEECCEEEEEECC
GLLEKVLTQLTVNTPPTDVPEAIEVDISTMQVGDMLYVKDLVLPPGIEVVNTPDLVVAHL
HHHHHHHHHEECCCCCCCCCCCEEEEEEEEEECCEEEEHHHCCCCCCEEECCCCEEEEEE
TPSPTGRALQSMDAAESAVEQPGEQPATAAG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TIPLTLKQRATGAQPRAMRREGRIPAVLYGHRGTQSLALELEQRTAEDLLKRVTINNTI
CCCEECCCCCCCCCCHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
LPLKVERGWSGDVLLREVQHDAVGGKLLHLSFFAVAGHGSITLDLPLVFTGEAVGVKMDG
EEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEEEEECCEEEEEECC
GLLEKVLTQLTVNTPPTDVPEAIEVDISTMQVGDMLYVKDLVLPPGIEVVNTPDLVVAHL
HHHHHHHHHEECCCCCCCCCCCEEEEEEEEEECCEEEEHHHCCCCCCEEECCCCEEEEEE
TPSPTGRALQSMDAAESAVEQPGEQPATAAG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292