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The map label for this gene is cyc [H]

Identifier: 34499841

GI number: 34499841

Start: 4729354

End: 4729968

Strand: Direct

Name: cyc [H]

Synonym: CV_4386

Alternate gene names: 34499841

Gene position: 4729354-4729968 (Clockwise)

Preceding gene: 34499839

Following gene: 34499842

Centisome position: 99.54

GC content: 66.83

Gene sequence:

>615_bases
ATGAGACGTAAAATGCTGTTGGCGATGGCAACCCTAACCCTGGCCGGCACCACGCTGGCAGCCTCTCCGGTGGCCAAGGG
TGACCCGGCGAAAGGCAAGCAGATCGTGGACACCGTGTGCGCGGCTTGCCACGGCGCCGACGGCAACAGCGTCGCAGCGG
CCAATCCCACCATCGCCGGGCAGAGCCAGCAATATCTGTATAGCCAGCTCAAGGCCTTCAAGAGCGGCGAGCGCAAGAAC
CCGACCATGCTGGGCATGACCGCCGGCCTGTCCGACGACGACATGCGCAACCTGGCCGCCTACTTCAGCCAGCAGAAGCC
CAAGGACCGCGAAGCCGCCGACAAGGCGCAGCTGCCGCTGGGCGCCAAGATCTACCGCGTCGGCAACCCCGCCAGCCACG
TGCCCGCCTGTATGTCCTGCCACGGCCCCGCCGGCAAGGGCCTGCCCGACCAGTTCCCCCGCCTGGGCAGCCAGCACGCC
GGCTACGTCGCCAAGCAGCTGGCCGACTTCAAGGCCGGCACCGACCGCAAGAACCTGATGATGACCGACATCGCCAGCCG
GATGACCGACGCCGAAATGAAGGCGGTGGCCGAGTACATTTCCGGTCTGCGCTGA

Upstream 100 bases:

>100_bases
ATCGACATGGTAGTAAGGTTGAAATCAATTGGTATAGAATAACAGGTTTGGAATTGCTACTTTTACAGATATTTTAGGGC
CTCACCCTAAAGGAGCGACC

Downstream 100 bases:

>100_bases
GCCGTGCCGCCCGCAGCCGGAGACCGGCCCGCCGCGCGGCGTCTTCCACGCGGCCGGACGCAACTTTGCCGCTCCGCCTC
ATTCAAAAGGGAAGCCCCGG

Product: cytochrome-c oxidase

Products: ferricytochrome c; H2O

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MRRKMLLAMATLTLAGTTLAASPVAKGDPAKGKQIVDTVCAACHGADGNSVAAANPTIAGQSQQYLYSQLKAFKSGERKN
PTMLGMTAGLSDDDMRNLAAYFSQQKPKDREAADKAQLPLGAKIYRVGNPASHVPACMSCHGPAGKGLPDQFPRLGSQHA
GYVAKQLADFKAGTDRKNLMMTDIASRMTDAEMKAVAEYISGLR

Sequences:

>Translated_204_residues
MRRKMLLAMATLTLAGTTLAASPVAKGDPAKGKQIVDTVCAACHGADGNSVAAANPTIAGQSQQYLYSQLKAFKSGERKN
PTMLGMTAGLSDDDMRNLAAYFSQQKPKDREAADKAQLPLGAKIYRVGNPASHVPACMSCHGPAGKGLPDQFPRLGSQHA
GYVAKQLADFKAGTDRKNLMMTDIASRMTDAEMKAVAEYISGLR
>Mature_204_residues
MRRKMLLAMATLTLAGTTLAASPVAKGDPAKGKQIVDTVCAACHGADGNSVAAANPTIAGQSQQYLYSQLKAFKSGERKN
PTMLGMTAGLSDDDMRNLAAYFSQQKPKDREAADKAQLPLGAKIYRVGNPASHVPACMSCHGPAGKGLPDQFPRLGSQHA
GYVAKQLADFKAGTDRKNLMMTDIASRMTDAEMKAVAEYISGLR

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: 1.9.3.1

Molecular weight: Translated: 21590; Mature: 21590

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRKMLLAMATLTLAGTTLAASPVAKGDPAKGKQIVDTVCAACHGADGNSVAAANPTIAG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCC
QSQQYLYSQLKAFKSGERKNPTMLGMTAGLSDDDMRNLAAYFSQQKPKDREAADKAQLPL
CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
GAKIYRVGNPASHVPACMSCHGPAGKGLPDQFPRLGSQHAGYVAKQLADFKAGTDRKNLM
CCEEEECCCCHHHCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
MTDIASRMTDAEMKAVAEYISGLR
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRKMLLAMATLTLAGTTLAASPVAKGDPAKGKQIVDTVCAACHGADGNSVAAANPTIAG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCC
QSQQYLYSQLKAFKSGERKNPTMLGMTAGLSDDDMRNLAAYFSQQKPKDREAADKAQLPL
CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
GAKIYRVGNPASHVPACMSCHGPAGKGLPDQFPRLGSQHAGYVAKQLADFKAGTDRKNLM
CCEEEECCCCHHHCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
MTDIASRMTDAEMKAVAEYISGLR
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ferrocytochrome c; O2

Specific reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7619830; 6089759 [H]