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The map label for this gene is rlpA [C]

Identifier: 34499839

GI number: 34499839

Start: 4727556

End: 4728434

Strand: Direct

Name: rlpA [C]

Synonym: CV_4384

Alternate gene names: 34499839

Gene position: 4727556-4728434 (Clockwise)

Preceding gene: 34499838

Following gene: 34499841

Centisome position: 99.5

GC content: 63.03

Gene sequence:

>879_bases
ATGCAACCTGTTCTCCGATGGCTGTGGCTTCTATTTGTCAGTCTCGTGCTTGTGGCCTGTTCCACCGTGAAGACGGCCAG
TGCCACAAACCAGTCGGCTTCGCCGGCTAACAAGAAGTCCGTTGCCAAAAACGGAGCTTATTTCCAGAACGACGGTCCGG
CCGATCATATCCCGGTCAACCTGAGCCTGGTTCCCGACGCCGTTCCGCAGGACGAGCCGCTTATCAAGTCGGCCAACCTG
CCTTACTCGGCGCTGGGCATGAGCTTCCGTCCCGACGTGCGTGAAAAGCCGTATCACGCCGTCGGCCGTGCCTCCTGGTA
CGGCAAGCAGTTCCACGGCCGCAAGACGTCGTCCGGCGAACGCTACGACATGTTCGCGATGACCGCCGCGCATCCGACCC
TGCCGATCCCGAGCTATGCCCGGGTGACCAATCTGACCAACGGCAAGTCGGTGGTGGTGCGCGTCAACGACTGCGGCCCG
TTCCACAAGAAGCGCCTGATGGACCTGTCCTACGCCGCCGCCTACAAGCTGGGCTTCGTCCAGCAGGGCAGCGCCAAGAT
CGCGATCGATCGCGTCTGGCCGGCGGAAGACAACACCTACTCCGCCTCCGCGCAGCCGGTAACCCAGCCTGCGAGCCGGG
AGCTGAAGGCCGGGGACAATCCGAAGTATCTGCAGCTGGGCTCGTTCAACACGCTGGCCAACGCCGAGGCGCTGCTGCAG
AAGACGCTGGACGAGATGGACGACAAGTACGACTCCAAGCTCGGCATCGTCAACCAGCAGGGCGTGTACAAGGTGCGCCT
GGGACCGTTCTCGTCCGACGACGCGGTGCGCAGCGCCGCGGAAAACCTGCACGTGGAGACCGTCATCACCAGTCTGTGA

Upstream 100 bases:

>100_bases
AATGCCGTCGCGGTGACGGTGTTCGAGGCTTGGCGCCAGCTCGGTTTCGAAGGGGGGGTATAGCGGTTCGCAAGGTTGGC
CCAACAGCATAGGGAGGTTT

Downstream 100 bases:

>100_bases
TGCTCCGCGCACGAATCGTATGGCAACAGGGCAAAAGGCGAAGGATGCATCCTTCGCCTTTTTTCATGCCCGCCGCCCGG
CCGCGCCCAATAAAAAGCCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MQPVLRWLWLLFVSLVLVACSTVKTASATNQSASPANKKSVAKNGAYFQNDGPADHIPVNLSLVPDAVPQDEPLIKSANL
PYSALGMSFRPDVREKPYHAVGRASWYGKQFHGRKTSSGERYDMFAMTAAHPTLPIPSYARVTNLTNGKSVVVRVNDCGP
FHKKRLMDLSYAAAYKLGFVQQGSAKIAIDRVWPAEDNTYSASAQPVTQPASRELKAGDNPKYLQLGSFNTLANAEALLQ
KTLDEMDDKYDSKLGIVNQQGVYKVRLGPFSSDDAVRSAAENLHVETVITSL

Sequences:

>Translated_292_residues
MQPVLRWLWLLFVSLVLVACSTVKTASATNQSASPANKKSVAKNGAYFQNDGPADHIPVNLSLVPDAVPQDEPLIKSANL
PYSALGMSFRPDVREKPYHAVGRASWYGKQFHGRKTSSGERYDMFAMTAAHPTLPIPSYARVTNLTNGKSVVVRVNDCGP
FHKKRLMDLSYAAAYKLGFVQQGSAKIAIDRVWPAEDNTYSASAQPVTQPASRELKAGDNPKYLQLGSFNTLANAEALLQ
KTLDEMDDKYDSKLGIVNQQGVYKVRLGPFSSDDAVRSAAENLHVETVITSL
>Mature_292_residues
MQPVLRWLWLLFVSLVLVACSTVKTASATNQSASPANKKSVAKNGAYFQNDGPADHIPVNLSLVPDAVPQDEPLIKSANL
PYSALGMSFRPDVREKPYHAVGRASWYGKQFHGRKTSSGERYDMFAMTAAHPTLPIPSYARVTNLTNGKSVVVRVNDCGP
FHKKRLMDLSYAAAYKLGFVQQGSAKIAIDRVWPAEDNTYSASAQPVTQPASRELKAGDNPKYLQLGSFNTLANAEALLQ
KTLDEMDDKYDSKLGIVNQQGVYKVRLGPFSSDDAVRSAAENLHVETVITSL

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=199, Percent_Identity=34.6733668341709, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 31932; Mature: 31932

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPVLRWLWLLFVSLVLVACSTVKTASATNQSASPANKKSVAKNGAYFQNDGPADHIPVN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEECCCCCCCEEEEE
LSLVPDAVPQDEPLIKSANLPYSALGMSFRPDVREKPYHAVGRASWYGKQFHGRKTSSGE
EEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHCCHHCCHHHCCCCCCCCC
RYDMFAMTAAHPTLPIPSYARVTNLTNGKSVVVRVNDCGPFHKKRLMDLSYAAAYKLGFV
CEEEEEEEECCCCCCCCCHHHHEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCEE
QQGSAKIAIDRVWPAEDNTYSASAQPVTQPASRELKAGDNPKYLQLGSFNTLANAEALLQ
ECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHH
KTLDEMDDKYDSKLGIVNQQGVYKVRLGPFSSDDAVRSAAENLHVETVITSL
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHEEECCC
>Mature Secondary Structure
MQPVLRWLWLLFVSLVLVACSTVKTASATNQSASPANKKSVAKNGAYFQNDGPADHIPVN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEECCCCCCCEEEEE
LSLVPDAVPQDEPLIKSANLPYSALGMSFRPDVREKPYHAVGRASWYGKQFHGRKTSSGE
EEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHCCHHCCHHHCCCCCCCCC
RYDMFAMTAAHPTLPIPSYARVTNLTNGKSVVVRVNDCGPFHKKRLMDLSYAAAYKLGFV
CEEEEEEEECCCCCCCCCHHHHEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCEE
QQGSAKIAIDRVWPAEDNTYSASAQPVTQPASRELKAGDNPKYLQLGSFNTLANAEALLQ
ECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHH
KTLDEMDDKYDSKLGIVNQQGVYKVRLGPFSSDDAVRSAAENLHVETVITSL
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]