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The map label for this gene is ygdL [C]

Identifier: 34499768

GI number: 34499768

Start: 4654044

End: 4654820

Strand: Direct

Name: ygdL [C]

Synonym: CV_4313

Alternate gene names: 34499768

Gene position: 4654044-4654820 (Clockwise)

Preceding gene: 34499766

Following gene: 34499772

Centisome position: 97.96

GC content: 67.7

Gene sequence:

>777_bases
ATGGACCACTCCGCCGATCTCGACCGCCGCTTCGGCGGCATTGCCCGCCTGTACGGCGACGACGCGCTGGCGGGCTTTCG
CCGCGCCCATGTCTGCGTGGTGGGCGTCGGCGGCGTCGGCTCCTGGGCGGTGGAAGCGCTGGCGCGCAGCGCGATCGGCA
AGCTGACGCTGATCGACCTGGACAACGTCGCCGAGTCCAACACCAACCGCCAGCTGCCGGCGCTGGACCCGCTGTACGGC
ATGGCCAAGGTGACCGCGCTGGCCGAGCGGGTCAAGGCCATCAACCCGGCCTGCGAGGTGACGGAAATAGAAGACTTCGT
TACCGAGGAAAACATGGATGCGATGCTGGGCCAGGGCTACGACTACATCGTCGACTGCATCGACAGCCTGAAAGTGAAGA
CGGCGATGGCCGCCTGGTGCGCCAGGAAGCGCCAGCGCTTCATCGTCTCCGGCGGCGCCGGCGGCCAGATGGACCCGAGC
CAGATCAAGCTGGCCGACCTGTCCGAGGTGACGCAGGACCCGCTGCTGTCCAAGCTGCGTTACAACCTGCGCCGCCACCA
CGGCTTCGCCCGCGACGGCAAGAAGATGGGCGTGCCCTGCGTCTACTCCACCGAACAGCTGGTCTACCCGCAGGCCCAGG
CCTGCGACGCCGGAGAGGCGCGCGGGCCTCAAGGTTTATCCTGCGCCGGCTTCGGCGCAGGCATGGTGGTGACGGCCAGC
TTCGGCCTGTTCGCCGCGTCGCGGGTGCTGACGGATCTGGCCAAGACTAAGAAGTAA

Upstream 100 bases:

>100_bases
CACACCTCAACCGGTCGTGCTTGCGCCCGAACCCGCCAGGGCTGGCAGCCCGGCCGCGGCTTGGTTATCCTTGGCCGTTT
TTGGGCAACAGGTTATCCCG

Downstream 100 bases:

>100_bases
GCAGGCCCCAGCTGCTTACAAAAACACACGGTTTTGCATCCGCTACGCGGATGATGATTTCCATTGCCGGGGCTGCCCGG
CAGACAGGGAGGGGATATTT

Product: HesA/MoeB/ThiF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MDHSADLDRRFGGIARLYGDDALAGFRRAHVCVVGVGGVGSWAVEALARSAIGKLTLIDLDNVAESNTNRQLPALDPLYG
MAKVTALAERVKAINPACEVTEIEDFVTEENMDAMLGQGYDYIVDCIDSLKVKTAMAAWCARKRQRFIVSGGAGGQMDPS
QIKLADLSEVTQDPLLSKLRYNLRRHHGFARDGKKMGVPCVYSTEQLVYPQAQACDAGEARGPQGLSCAGFGAGMVVTAS
FGLFAASRVLTDLAKTKK

Sequences:

>Translated_258_residues
MDHSADLDRRFGGIARLYGDDALAGFRRAHVCVVGVGGVGSWAVEALARSAIGKLTLIDLDNVAESNTNRQLPALDPLYG
MAKVTALAERVKAINPACEVTEIEDFVTEENMDAMLGQGYDYIVDCIDSLKVKTAMAAWCARKRQRFIVSGGAGGQMDPS
QIKLADLSEVTQDPLLSKLRYNLRRHHGFARDGKKMGVPCVYSTEQLVYPQAQACDAGEARGPQGLSCAGFGAGMVVTAS
FGLFAASRVLTDLAKTKK
>Mature_258_residues
MDHSADLDRRFGGIARLYGDDALAGFRRAHVCVVGVGGVGSWAVEALARSAIGKLTLIDLDNVAESNTNRQLPALDPLYG
MAKVTALAERVKAINPACEVTEIEDFVTEENMDAMLGQGYDYIVDCIDSLKVKTAMAAWCARKRQRFIVSGGAGGQMDPS
QIKLADLSEVTQDPLLSKLRYNLRRHHGFARDGKKMGVPCVYSTEQLVYPQAQACDAGEARGPQGLSCAGFGAGMVVTAS
FGLFAASRVLTDLAKTKK

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=250, Percent_Identity=50.4, Blast_Score=258, Evalue=2e-70,
Organism=Escherichia coli, GI1787048, Length=140, Percent_Identity=30.7142857142857, Blast_Score=73, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321790, Length=257, Percent_Identity=26.8482490272374, Blast_Score=90, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6322825, Length=163, Percent_Identity=31.9018404907975, Blast_Score=83, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24582879, Length=136, Percent_Identity=28.6764705882353, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 27662; Mature: 27662

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHSADLDRRFGGIARLYGDDALAGFRRAHVCVVGVGGVGSWAVEALARSAIGKLTLIDL
CCCCCCHHHHHCCHHHHHCCHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHCCEEEEEC
DNVAESNTNRQLPALDPLYGMAKVTALAERVKAINPACEVTEIEDFVTEENMDAMLGQGY
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCH
DYIVDCIDSLKVKTAMAAWCARKRQRFIVSGGAGGQMDPSQIKLADLSEVTQDPLLSKLR
HHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHEEHHHHHHHHHHHHHHHHH
YNLRRHHGFARDGKKMGVPCVYSTEQLVYPQAQACDAGEARGPQGLSCAGFGAGMVVTAS
HHHHHHCCCCCCCCCCCCCEEECCCHHCCCCHHCCCCCCCCCCCCCEECCCCCCHHHHHH
FGLFAASRVLTDLAKTKK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDHSADLDRRFGGIARLYGDDALAGFRRAHVCVVGVGGVGSWAVEALARSAIGKLTLIDL
CCCCCCHHHHHCCHHHHHCCHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHCCEEEEEC
DNVAESNTNRQLPALDPLYGMAKVTALAERVKAINPACEVTEIEDFVTEENMDAMLGQGY
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCH
DYIVDCIDSLKVKTAMAAWCARKRQRFIVSGGAGGQMDPSQIKLADLSEVTQDPLLSKLR
HHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHEEHHHHHHHHHHHHHHHHH
YNLRRHHGFARDGKKMGVPCVYSTEQLVYPQAQACDAGEARGPQGLSCAGFGAGMVVTAS
HHHHHHCCCCCCCCCCCCCEEECCCHHCCCCHHCCCCCCCCCCCCCEECCCCCCHHHHHH
FGLFAASRVLTDLAKTKK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]