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The map label for this gene is yhbU [H]

Identifier: 34499539

GI number: 34499539

Start: 4421316

End: 4422332

Strand: Direct

Name: yhbU [H]

Synonym: CV_4084

Alternate gene names: 34499539

Gene position: 4421316-4422332 (Clockwise)

Preceding gene: 34499538

Following gene: 34499540

Centisome position: 93.06

GC content: 68.83

Gene sequence:

>1017_bases
ATGCCAGCCAGTCAGAAACTGCCGGAACTGGTGTGTCCGGCGGGCAGCCTGCCCGCGCTCAAGGCCGCCGTCGACCATGG
CGCCGACACCGTCTACTTCGGCCTGAAAAACGACACCAACGCCCGCAACTTCGCCGGCCTCAATTTCGACGAGCACACCG
CCCGCATCGGCATCCGCTACGCGCACGAACGCGGCCGCCAGGTGCTGATGGCGATCAACACCTATGCCCAGGGCGGCGAC
ATCAGCCGCTGGCGCCGCGCGGTGGACCAGGCGGCGGACCTGGGCGTGGACGCCGTGATCCTGGCCGACCTCGGCCTGCT
GGACTACGCCAGCCGCCGCCATCCCGGCCTGCGGCTGCACCTGTCGGTGCAGGGCTCCGCCACCAACCACGAGGCGCTGA
AGCTGGCGCACGACTTGTTCGGCATCCAGCGCGCGGTGCTGCCGCGCGTGCTGACCCTGGACCAGGTCAGGAAGGTGATC
GAACACAGCCCGGTCGAGATCGAAGTGTTCGGCTTCGGCAGCCTGTGCGTAATGGTGGAAGGCCGCTGCCTGCTGTCCAG
CTATGCCACCGGCGAATCGCCGAACAGCCACGGCGTCTGCTCGCCGGCCAAGTACGTGCAGTGGCAGAACACGCCGTCCA
GCCTGGACGCGCGTTTGTCCGGCATCCTGATCGACCAGTACGGCCTGGACCAGCCTGCCGGCTACCCGACCCTGTGCAAA
GGCCGCTTCGAGGTCCAGGGCGACACCTACTACGCGCTGGAGGAACCCACCAGCCTCAACGTGCTGGCGGTGCTGCCGCA
GTTGCTGGAAATGGGCGTGGCCGCGATCAAGATAGAAGGCCGCCAGCGCAGCCCGGCCTACGTCGCCCAGGTGACCCGCG
CGCTGCGCGAGGCGCTGGACGCCGCCGGCCGCGAGCGGCACCGCTTCATGGTCCAGCCCGCCTGGCAGCAGGCGCTGAGC
AAGGTGGCGGAAGGACACCAGCAGACGCTGGGCGCCTACGATCGCCCGTGGAAGTGA

Upstream 100 bases:

>100_bases
CCGCCCCCGATGGCGCGACCGGCGCTCCTTGACCCAAAACAAGGGCAGCCAGGCGCCCATCTGCTACTGTCCCCGCATTT
CCCCTATCTGCGACTTTCCC

Downstream 100 bases:

>100_bases
ACCTGCAGCATGGATATCCGCATGAATCCCATTCCCCTGAAACTGTCGCTCGGCCCGGTGCTGTTCTTCTGGAGCCGCGA
CGACATCCTCCGTTTTTACG

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MPASQKLPELVCPAGSLPALKAAVDHGADTVYFGLKNDTNARNFAGLNFDEHTARIGIRYAHERGRQVLMAINTYAQGGD
ISRWRRAVDQAADLGVDAVILADLGLLDYASRRHPGLRLHLSVQGSATNHEALKLAHDLFGIQRAVLPRVLTLDQVRKVI
EHSPVEIEVFGFGSLCVMVEGRCLLSSYATGESPNSHGVCSPAKYVQWQNTPSSLDARLSGILIDQYGLDQPAGYPTLCK
GRFEVQGDTYYALEEPTSLNVLAVLPQLLEMGVAAIKIEGRQRSPAYVAQVTRALREALDAAGRERHRFMVQPAWQQALS
KVAEGHQQTLGAYDRPWK

Sequences:

>Translated_338_residues
MPASQKLPELVCPAGSLPALKAAVDHGADTVYFGLKNDTNARNFAGLNFDEHTARIGIRYAHERGRQVLMAINTYAQGGD
ISRWRRAVDQAADLGVDAVILADLGLLDYASRRHPGLRLHLSVQGSATNHEALKLAHDLFGIQRAVLPRVLTLDQVRKVI
EHSPVEIEVFGFGSLCVMVEGRCLLSSYATGESPNSHGVCSPAKYVQWQNTPSSLDARLSGILIDQYGLDQPAGYPTLCK
GRFEVQGDTYYALEEPTSLNVLAVLPQLLEMGVAAIKIEGRQRSPAYVAQVTRALREALDAAGRERHRFMVQPAWQQALS
KVAEGHQQTLGAYDRPWK
>Mature_337_residues
PASQKLPELVCPAGSLPALKAAVDHGADTVYFGLKNDTNARNFAGLNFDEHTARIGIRYAHERGRQVLMAINTYAQGGDI
SRWRRAVDQAADLGVDAVILADLGLLDYASRRHPGLRLHLSVQGSATNHEALKLAHDLFGIQRAVLPRVLTLDQVRKVIE
HSPVEIEVFGFGSLCVMVEGRCLLSSYATGESPNSHGVCSPAKYVQWQNTPSSLDARLSGILIDQYGLDQPAGYPTLCKG
RFEVQGDTYYALEEPTSLNVLAVLPQLLEMGVAAIKIEGRQRSPAYVAQVTRALREALDAAGRERHRFMVQPAWQQALSK
VAEGHQQTLGAYDRPWK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=330, Percent_Identity=55.7575757575758, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI1788397, Length=323, Percent_Identity=30.6501547987616, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI87081910, Length=353, Percent_Identity=28.328611898017, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 37031; Mature: 36899

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASQKLPELVCPAGSLPALKAAVDHGADTVYFGLKNDTNARNFAGLNFDEHTARIGIRY
CCCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCCHHHHHHEEE
AHERGRQVLMAINTYAQGGDISRWRRAVDQAADLGVDAVILADLGLLDYASRRHPGLRLH
HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
LSVQGSATNHEALKLAHDLFGIQRAVLPRVLTLDQVRKVIEHSPVEIEVFGFGSLCVMVE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEC
GRCLLSSYATGESPNSHGVCSPAKYVQWQNTPSSLDARLSGILIDQYGLDQPAGYPTLCK
CCHHHHHCCCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHEEEEECCCCCCCCCCCCEEC
GRFEVQGDTYYALEEPTSLNVLAVLPQLLEMGVAAIKIEGRQRSPAYVAQVTRALREALD
CEEEECCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
AAGRERHRFMVQPAWQQALSKVAEGHQQTLGAYDRPWK
HCCCHHHEEEECHHHHHHHHHHHCCHHHHHCCCCCCCC
>Mature Secondary Structure 
PASQKLPELVCPAGSLPALKAAVDHGADTVYFGLKNDTNARNFAGLNFDEHTARIGIRY
CCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCCHHHHHHEEE
AHERGRQVLMAINTYAQGGDISRWRRAVDQAADLGVDAVILADLGLLDYASRRHPGLRLH
HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
LSVQGSATNHEALKLAHDLFGIQRAVLPRVLTLDQVRKVIEHSPVEIEVFGFGSLCVMVE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEC
GRCLLSSYATGESPNSHGVCSPAKYVQWQNTPSSLDARLSGILIDQYGLDQPAGYPTLCK
CCHHHHHCCCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHEEEEECCCCCCCCCCCCEEC
GRFEVQGDTYYALEEPTSLNVLAVLPQLLEMGVAAIKIEGRQRSPAYVAQVTRALREALD
CEEEECCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
AAGRERHRFMVQPAWQQALSKVAEGHQQTLGAYDRPWK
HCCCHHHEEEECHHHHHHHHHHHCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]