| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499477
Identifier: 34499477
GI number: 34499477
Start: 4348261
End: 4349241
Strand: Reverse
Name: 34499477
Synonym: CV_4022
Alternate gene names: NA
Gene position: 4349241-4348261 (Counterclockwise)
Preceding gene: 34499478
Following gene: 34499476
Centisome position: 91.54
GC content: 42.81
Gene sequence:
>981_bases GTGAGTAAAGCAAAGATATATATCACATTTGACTATGAGTTATTCTTTGGACCAGACTCTGGATCAATAGAGGCATGCAT ATTGCAACCGACTAGAGAGCTGATGAAGGTTGGTAGTGATTGTGATGTGAACTTTACTTTTTTCGTAGATGCCGGAATGC TCTGTGCTTTTAAGCGCAATATGAGCATATACCCTGAACTGGCGGTGTCATACGAACAGGTGATCTCCCAAATTAGAGAA TTGGATCGCAAGGGCCATACGATTGCTCTGCATATTCACTCGCATTGGGAGGACGCTGTTTATGAAGGCGGCAAGTGGGT TTTTGATACAAGTCGATACCGCTTATCTAGCTTTTCTCAGCAAGAAGCCGATGAGATTATTCGGCGATATTTCAATGAGC TGTCCCTGCATTGTGAAAAGCCAATCAAAGCTTTCCGCGCGGGTGGCTGGTGCGTACAACCATTTGAAGTGTTCCGCTCG ACATTCGCTGAGCTAGGTATAGCGATCGATAGTTCGCTGTATAAAGATGGCTATATGTCTACAAAATCTCATCAATTCGA TTTTCGAGGAATGCCGAGTTCTACAATATGGAATTTTAATTCTGATCCCATGATGATTGAAATGGATGGAATTTTTACAG AAATACCTATAGCATCTACTGCTTATTCGAGATTTTTCTATTTAGGGATGTTATGGCACCGTCTGCTGAAAACAGAAAAG TATCGAATGTTCGGGGATGGAAGGGCTATTGGTGGTGGTCGCAAGCGTCAGCTGAAATCTATTGCAGAGGGTGATTTTGG TGTAGTCTCTCTGGATTCTTATAGATGCCGTCAGCTTAAGTCGGCTTGGAGAAAGTTTTTAAAATCAACACCTGATGGGC ATTTTGTTGTTATTGCGCATCCCAAGGCTTTGTCTCGGGCCTCGGTTGAGGTTTTGGCTGATTTTGCCAAAGCAGAGAGA AATCGTTTCTCGATAATGTAA
Upstream 100 bases:
>100_bases CCATTTAAATATTGGTTATTTAATTTTATGGTTCGCGTCTACTTCCGTTTGAAGGGCTGGGAATACAAGGATGCAATAGA CCAGATTAGGATGCAATCTA
Downstream 100 bases:
>100_bases TATCGGATATAGCGCTGTGCATATTTTATTTTTAACTGATAATTTTCCGCCGGAAGTAAATGCTCCCGCAAGTAGAACAT TTGAACATTGCCGCGAGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MSKAKIYITFDYELFFGPDSGSIEACILQPTRELMKVGSDCDVNFTFFVDAGMLCAFKRNMSIYPELAVSYEQVISQIRE LDRKGHTIALHIHSHWEDAVYEGGKWVFDTSRYRLSSFSQQEADEIIRRYFNELSLHCEKPIKAFRAGGWCVQPFEVFRS TFAELGIAIDSSLYKDGYMSTKSHQFDFRGMPSSTIWNFNSDPMMIEMDGIFTEIPIASTAYSRFFYLGMLWHRLLKTEK YRMFGDGRAIGGGRKRQLKSIAEGDFGVVSLDSYRCRQLKSAWRKFLKSTPDGHFVVIAHPKALSRASVEVLADFAKAER NRFSIM
Sequences:
>Translated_326_residues MSKAKIYITFDYELFFGPDSGSIEACILQPTRELMKVGSDCDVNFTFFVDAGMLCAFKRNMSIYPELAVSYEQVISQIRE LDRKGHTIALHIHSHWEDAVYEGGKWVFDTSRYRLSSFSQQEADEIIRRYFNELSLHCEKPIKAFRAGGWCVQPFEVFRS TFAELGIAIDSSLYKDGYMSTKSHQFDFRGMPSSTIWNFNSDPMMIEMDGIFTEIPIASTAYSRFFYLGMLWHRLLKTEK YRMFGDGRAIGGGRKRQLKSIAEGDFGVVSLDSYRCRQLKSAWRKFLKSTPDGHFVVIAHPKALSRASVEVLADFAKAER NRFSIM >Mature_325_residues SKAKIYITFDYELFFGPDSGSIEACILQPTRELMKVGSDCDVNFTFFVDAGMLCAFKRNMSIYPELAVSYEQVISQIREL DRKGHTIALHIHSHWEDAVYEGGKWVFDTSRYRLSSFSQQEADEIIRRYFNELSLHCEKPIKAFRAGGWCVQPFEVFRST FAELGIAIDSSLYKDGYMSTKSHQFDFRGMPSSTIWNFNSDPMMIEMDGIFTEIPIASTAYSRFFYLGMLWHRLLKTEKY RMFGDGRAIGGGRKRQLKSIAEGDFGVVSLDSYRCRQLKSAWRKFLKSTPDGHFVVIAHPKALSRASVEVLADFAKAERN RFSIM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37498; Mature: 37367
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKAKIYITFDYELFFGPDSGSIEACILQPTRELMKVGSDCDVNFTFFVDAGMLCAFKRN CCCEEEEEEEEEEEEECCCCCCEEEEEECCHHHHHHCCCCCCCEEEEEECCCEEEEECCC MSIYPELAVSYEQVISQIRELDRKGHTIALHIHSHWEDAVYEGGKWVFDTSRYRLSSFSQ CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCEEEEECCCHHHHCCCH QEADEIIRRYFNELSLHCEKPIKAFRAGGWCVQPFEVFRSTFAELGIAIDSSLYKDGYMS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCC TKSHQFDFRGMPSSTIWNFNSDPMMIEMDGIFTEIPIASTAYSRFFYLGMLWHRLLKTEK CCCCCCCCCCCCCCCEECCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH YRMFGDGRAIGGGRKRQLKSIAEGDFGVVSLDSYRCRQLKSAWRKFLKSTPDGHFVVIAH HEEEECCCCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEC PKALSRASVEVLADFAKAERNRFSIM CHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SKAKIYITFDYELFFGPDSGSIEACILQPTRELMKVGSDCDVNFTFFVDAGMLCAFKRN CCEEEEEEEEEEEEECCCCCCEEEEEECCHHHHHHCCCCCCCEEEEEECCCEEEEECCC MSIYPELAVSYEQVISQIRELDRKGHTIALHIHSHWEDAVYEGGKWVFDTSRYRLSSFSQ CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCEEEEECCCHHHHCCCH QEADEIIRRYFNELSLHCEKPIKAFRAGGWCVQPFEVFRSTFAELGIAIDSSLYKDGYMS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCC TKSHQFDFRGMPSSTIWNFNSDPMMIEMDGIFTEIPIASTAYSRFFYLGMLWHRLLKTEK CCCCCCCCCCCCCCCEECCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH YRMFGDGRAIGGGRKRQLKSIAEGDFGVVSLDSYRCRQLKSAWRKFLKSTPDGHFVVIAH HEEEECCCCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEC PKALSRASVEVLADFAKAERNRFSIM CHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA