| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499393
Identifier: 34499393
GI number: 34499393
Start: 4258405
End: 4258953
Strand: Direct
Name: 34499393
Synonym: CV_3938
Alternate gene names: NA
Gene position: 4258405-4258953 (Clockwise)
Preceding gene: 34499392
Following gene: 34499394
Centisome position: 89.63
GC content: 66.67
Gene sequence:
>549_bases ATGAATAAACCGATGACCGCCACGTACTCTCCGGACGACGACAGGATGAGAATCTACGCGCGCGGCACGCTCAGCGGACC GCTGTGCGCGATGCTGGAGCACCAGGGTTTCCAGCTGCTGCCCGAAGCCATGGTCTTCGTTTCCTCCACCGGCTGGTCGC TTCGGCAGGAAGCCCTGCTGCTGCAGCTGTGCGGCACGATAGAAGACGACGCGGTATGGCATGGCGATCTCTACCTGCCC TATATCGGGCACATGCCTTACCGGGACCTGCCGCCGGGCACCGGCCCCTGGTACGACCCGCGCTACTGGCAGGTGCGCGC GGCGACGCTGGCCGGCCGCCAGCATCCGGAAGAGAAGGTGCTGCAGCCATTGCGGCTGGCGCGCATCCCCCTGCTGCGCC GTCAGATCGCCAGCCTGCCCGCCGGGCTGGAGGACGAGGAAACCGGCCCGCCCCGCGGATGGTCCAATCAGCGCCTCACC CTGTATCGGCTGAAACTGCAGCTATCCTATTGCCTTCGCTTCCAGCAGGAGGCCCGCCAGGCCGCCTGA
Upstream 100 bases:
>100_bases GTTACGCCTGGTAGGACAAAGGGGCAAAATCCAGCCTCGAGCCAGGAGCACCGGCATGCAGGCTCATAGACTGCCGCGCG CAAACAACGGGAGGGGAAAC
Downstream 100 bases:
>100_bases GCGCGCCGCCCCCGCCCAAACCGCATTCGGCTGCGCATCGCCCCGTCGCGCCAGTCACGCCTTTCCTTTTCGAATAGCCT GGAACCATGCGCTGCGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MNKPMTATYSPDDDRMRIYARGTLSGPLCAMLEHQGFQLLPEAMVFVSSTGWSLRQEALLLQLCGTIEDDAVWHGDLYLP YIGHMPYRDLPPGTGPWYDPRYWQVRAATLAGRQHPEEKVLQPLRLARIPLLRRQIASLPAGLEDEETGPPRGWSNQRLT LYRLKLQLSYCLRFQQEARQAA
Sequences:
>Translated_182_residues MNKPMTATYSPDDDRMRIYARGTLSGPLCAMLEHQGFQLLPEAMVFVSSTGWSLRQEALLLQLCGTIEDDAVWHGDLYLP YIGHMPYRDLPPGTGPWYDPRYWQVRAATLAGRQHPEEKVLQPLRLARIPLLRRQIASLPAGLEDEETGPPRGWSNQRLT LYRLKLQLSYCLRFQQEARQAA >Mature_182_residues MNKPMTATYSPDDDRMRIYARGTLSGPLCAMLEHQGFQLLPEAMVFVSSTGWSLRQEALLLQLCGTIEDDAVWHGDLYLP YIGHMPYRDLPPGTGPWYDPRYWQVRAATLAGRQHPEEKVLQPLRLARIPLLRRQIASLPAGLEDEETGPPRGWSNQRLT LYRLKLQLSYCLRFQQEARQAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20850; Mature: 20850
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKPMTATYSPDDDRMRIYARGTLSGPLCAMLEHQGFQLLPEAMVFVSSTGWSLRQEALL CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH LQLCGTIEDDAVWHGDLYLPYIGHMPYRDLPPGTGPWYDPRYWQVRAATLAGRQHPEEKV HHHHCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCHHHH LQPLRLARIPLLRRQIASLPAGLEDEETGPPRGWSNQRLTLYRLKLQLSYCLRFQQEARQ HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH AA CC >Mature Secondary Structure MNKPMTATYSPDDDRMRIYARGTLSGPLCAMLEHQGFQLLPEAMVFVSSTGWSLRQEALL CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH LQLCGTIEDDAVWHGDLYLPYIGHMPYRDLPPGTGPWYDPRYWQVRAATLAGRQHPEEKV HHHHCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCHHHH LQPLRLARIPLLRRQIASLPAGLEDEETGPPRGWSNQRLTLYRLKLQLSYCLRFQQEARQ HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH AA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA