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The map label for this gene is rfbH [H]

Identifier: 34499346

GI number: 34499346

Start: 4199633

End: 4200946

Strand: Reverse

Name: rfbH [H]

Synonym: CV_3891

Alternate gene names: 34499346

Gene position: 4200946-4199633 (Counterclockwise)

Preceding gene: 34499347

Following gene: 34499345

Centisome position: 88.42

GC content: 66.06

Gene sequence:

>1314_bases
ATGACTGACACAAGCCGAGAGGCCATTCTCGCCCTGGTGCGTCAATACGCCGAAGCGCGCCTGGCCCAGGCCGAATTCAT
TCCCGGCCAGACCGCCGTGCCGCCGTCCGGCAAGGTGGTGGGCGCCGCCGAAGTGGCGAACATGGTGGACGCCGCGCTGG
ACGCCTGGCTGACCACCGGCCGCTTCAACGCGTCCTTTGAAACCCGGCTGGGCGAATTCATCGGCCTGCCGCACGTGCTG
ACCGTCAATTCCGGCTCGTCGGCCAATCTGGTGGCCTTCACCGCGCTGACCTCGCCCAAGCTTGGCGAGCGCGCGATCAA
GCCCGGCGACGAAGTGATCACCGTGGCGGCGGGCTTCCCCACCACGGTCAATCCCATCATCCAGAACGGCGCGGTGCCGG
TGTTCGTCGACGTGCAGCTACCGACCTACAATATCGACGCCGATCTGCTGGAGGCCGCGCTGTCGCCGCGCACCAAGGCC
ATCATGATCGCCCACACGCTGGGCAACCCGTTCGATCTGGACAAGGTGGCCGCTTTCGCCCGCAAGCACGGCCTGTGGCT
GGTGGAGGATTGCTGCGACGCGCTGGGCTCCACCTTCAACGGCCAGAAGGTCGGCACCTTTGGCGACATCGGCACGCTCA
GCTTCTATCCGGCCCACCACATCACCATGGGCGAGGGCGGCGCGGTGTTCACCCGCGACCCGCAACTGCGGCTGATCATG
GAGTCGGTGCGCGACTGGGGCCGCGACTGCTATTGCGCGCCGGGCAAGGACAATACCTGCGGCAAGCGCTTTTCCTGGCA
GCTGGGCCAACTGCCCTGCGGCTACGACCACAAGTACACCTATTCCCACATGGGGTACAACCTGAAGATCAGCGACATGC
AGGCGGCCTGCGGGCTGGCCCAGCTGGACCGGCTGGAGGGCTTCATCGCGGCGCGCAAGCAGAACTTCGCCTATTTGAGC
GAGCGGCTGCAAAGCTGCGCCGAATTCCTGGTGCTGCCGCAGGCGACGCCGGGTTCGGACCCGTCCTGGTTCGGCTTCCC
GCTGACGCTGAAGCCGGAGGCGCAGCTCAGCCGGGTCGACCTGCTGCACTACCTGGACCAGCACCGCATCGGCACCCGGC
TGCTGTTCGCCGGCAACCTGACCCGGCAGCCCTATATGCAAGGCCGGAACTACCGCTGCGCGACGCCGCTGCCGGTGACC
GACCGCATCATGAACGACACCTTCTGGATCGGCCTCTATCCGGGCTTGAGCCGGGAGATGCTGGATTTCACCGTCGAGAA
GCTGGAAACCTTCCTCGGCGCCAACTTCGACTAG

Upstream 100 bases:

>100_bases
CTGGACTGGCATCGCGCCTGGCTGCGCGGCGAGGACATGCAGGCCTTCACCTTAAAGCAGATCTCAGCCTATACGCGCGG
CTGAGCAGAGAGAGCAAGAC

Downstream 100 bases:

>100_bases
AGAGGCCCATCATGAGCAAGCCGCTATTCATCTTCGAGATGGCCAACAACCACATGGGCAACGTCGAGCACGGCGTCGCG
CTGATCCGCGCCATCCGCGA

Product: CDP-6deoxy-D-xylo-4-hexulose-3-dehydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MTDTSREAILALVRQYAEARLAQAEFIPGQTAVPPSGKVVGAAEVANMVDAALDAWLTTGRFNASFETRLGEFIGLPHVL
TVNSGSSANLVAFTALTSPKLGERAIKPGDEVITVAAGFPTTVNPIIQNGAVPVFVDVQLPTYNIDADLLEAALSPRTKA
IMIAHTLGNPFDLDKVAAFARKHGLWLVEDCCDALGSTFNGQKVGTFGDIGTLSFYPAHHITMGEGGAVFTRDPQLRLIM
ESVRDWGRDCYCAPGKDNTCGKRFSWQLGQLPCGYDHKYTYSHMGYNLKISDMQAACGLAQLDRLEGFIAARKQNFAYLS
ERLQSCAEFLVLPQATPGSDPSWFGFPLTLKPEAQLSRVDLLHYLDQHRIGTRLLFAGNLTRQPYMQGRNYRCATPLPVT
DRIMNDTFWIGLYPGLSREMLDFTVEKLETFLGANFD

Sequences:

>Translated_437_residues
MTDTSREAILALVRQYAEARLAQAEFIPGQTAVPPSGKVVGAAEVANMVDAALDAWLTTGRFNASFETRLGEFIGLPHVL
TVNSGSSANLVAFTALTSPKLGERAIKPGDEVITVAAGFPTTVNPIIQNGAVPVFVDVQLPTYNIDADLLEAALSPRTKA
IMIAHTLGNPFDLDKVAAFARKHGLWLVEDCCDALGSTFNGQKVGTFGDIGTLSFYPAHHITMGEGGAVFTRDPQLRLIM
ESVRDWGRDCYCAPGKDNTCGKRFSWQLGQLPCGYDHKYTYSHMGYNLKISDMQAACGLAQLDRLEGFIAARKQNFAYLS
ERLQSCAEFLVLPQATPGSDPSWFGFPLTLKPEAQLSRVDLLHYLDQHRIGTRLLFAGNLTRQPYMQGRNYRCATPLPVT
DRIMNDTFWIGLYPGLSREMLDFTVEKLETFLGANFD
>Mature_436_residues
TDTSREAILALVRQYAEARLAQAEFIPGQTAVPPSGKVVGAAEVANMVDAALDAWLTTGRFNASFETRLGEFIGLPHVLT
VNSGSSANLVAFTALTSPKLGERAIKPGDEVITVAAGFPTTVNPIIQNGAVPVFVDVQLPTYNIDADLLEAALSPRTKAI
MIAHTLGNPFDLDKVAAFARKHGLWLVEDCCDALGSTFNGQKVGTFGDIGTLSFYPAHHITMGEGGAVFTRDPQLRLIME
SVRDWGRDCYCAPGKDNTCGKRFSWQLGQLPCGYDHKYTYSHMGYNLKISDMQAACGLAQLDRLEGFIAARKQNFAYLSE
RLQSCAEFLVLPQATPGSDPSWFGFPLTLKPEAQLSRVDLLHYLDQHRIGTRLLFAGNLTRQPYMQGRNYRCATPLPVTD
RIMNDTFWIGLYPGLSREMLDFTVEKLETFLGANFD

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=404, Percent_Identity=27.7227722772277, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI2367285, Length=215, Percent_Identity=36.7441860465116, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 47944; Mature: 47813

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTSREAILALVRQYAEARLAQAEFIPGQTAVPPSGKVVGAAEVANMVDAALDAWLTTG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCC
RFNASFETRLGEFIGLPHVLTVNSGSSANLVAFTALTSPKLGERAIKPGDEVITVAAGFP
CCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCC
TTVNPIIQNGAVPVFVDVQLPTYNIDADLLEAALSPRTKAIMIAHTLGNPFDLDKVAAFA
CCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH
RKHGLWLVEDCCDALGSTFNGQKVGTFGDIGTLSFYPAHHITMGEGGAVFTRDPQLRLIM
HHCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEECCCHHHHHH
ESVRDWGRDCYCAPGKDNTCGKRFSWQLGQLPCGYDHKYTYSHMGYNLKISDMQAACGLA
HHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCEEEEECCHHHHHHHH
QLDRLEGFIAARKQNFAYLSERLQSCAEFLVLPQATPGSDPSWFGFPLTLKPEAQLSRVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEECCCHHHHHHH
LLHYLDQHRIGTRLLFAGNLTRQPYMQGRNYRCATPLPVTDRIMNDTFWIGLYPGLSREM
HHHHHHHHCCCEEEEEECCCCCCHHHCCCCEEECCCCCHHHHHHCCEEEEEECCCCCHHH
LDFTVEKLETFLGANFD
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDTSREAILALVRQYAEARLAQAEFIPGQTAVPPSGKVVGAAEVANMVDAALDAWLTTG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCC
RFNASFETRLGEFIGLPHVLTVNSGSSANLVAFTALTSPKLGERAIKPGDEVITVAAGFP
CCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCC
TTVNPIIQNGAVPVFVDVQLPTYNIDADLLEAALSPRTKAIMIAHTLGNPFDLDKVAAFA
CCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH
RKHGLWLVEDCCDALGSTFNGQKVGTFGDIGTLSFYPAHHITMGEGGAVFTRDPQLRLIM
HHCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEECCCHHHHHH
ESVRDWGRDCYCAPGKDNTCGKRFSWQLGQLPCGYDHKYTYSHMGYNLKISDMQAACGLA
HHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCEEEEECCHHHHHHHH
QLDRLEGFIAARKQNFAYLSERLQSCAEFLVLPQATPGSDPSWFGFPLTLKPEAQLSRVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEECCCHHHHHHH
LLHYLDQHRIGTRLLFAGNLTRQPYMQGRNYRCATPLPVTDRIMNDTFWIGLYPGLSREM
HHHHHHHHCCCEEEEEECCCCCCHHHCCCCEEECCCCCHHHHHHCCEEEEEECCCCCHHH
LDFTVEKLETFLGANFD
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]