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The map label for this gene is gspD [H]

Identifier: 34499269

GI number: 34499269

Start: 4111753

End: 4113879

Strand: Reverse

Name: gspD [H]

Synonym: CV_3814

Alternate gene names: 34499269

Gene position: 4113879-4111753 (Counterclockwise)

Preceding gene: 34499270

Following gene: 34499268

Centisome position: 86.59

GC content: 65.02

Gene sequence:

>2127_bases
ATGCGAATTTCCAAACTCGTCGTCGCCCTGTCCCTGATTTACAGCTGCAATCTGCTCGCCGCGCCGCAGAACGATACGGT
CATGCTCAATTTCGTCAATGCCGACATCGAGACCGTGGTCAAGGCGATAGGCGAGATCAGCGGCAAGAATTTCATCATCG
ATCCGCGGGTCAAGGGTACGGTCAACATCGTGTCCAGCCGGCCGGTGCCGCGCGCGCTGTCCTATCAGGTGCTGCTGTCC
TCGCTGCGCCTGCAGGGCTTTTCCGCGGTGGAGGGCAACGGCGTGATCAAGATCGTGCCGGAAGCGGACGCCAAGCTGCA
CGCCAAGGCCAGCAAGCGCATTCCGCGTGGCGACGGCGACCGCCTGATCACCAAGGTGTTCGCGCTGAGAAACAGCAACG
CCAACCAGCTGGTGCCGGTGATCCGCCCGCTGGTGTCGCCCAACAACACGGTGGCAGCCTATCCGCAGGCCAATGCGCTG
ATCGTCACCGACTATGCCGACAACATCCAGCGCATCGAGTCCATCATCGAGTCCGTAGAGTCGGCGGCGGCGGGTGACAC
CGTGGTGATCCCGGTGCTGTTCGGCTCGGCGGTGGAGTTGGCCAACTCGCTGAACAAGCTGATGCAGGAAGGAGGCGCCG
ATGGCGGCAAAACCACCATCCTGGCCGACGCCCGCGCCAACGTGCTGCTGGTGCGCGCCGACACGCCGGGCAAGATCGGC
AAGGTGAAGAGCCTGCTGAAAGTGCTGGACCAGCCCAGCCAGGCCGGCTCCAATGTCCGCGTGGTGTATTTGAAGAACGC
CCAGGCGTCCGAGGTGGCCAAGACGCTGCGCCTGCTGCTGGCCAGCGAGGGTAGTCCGGTGCAGACGCGCAGCACGATCA
ATACCGCCACGTCCACCGGCGGCAGCGCCAGCCTGATGCCTTCCACAACCGGCTCAGGCAGCGGCGCCTCGGCGCAGAAC
CCGGTGTCGTCGCCGGACGCCGGCGCGGCCGTGGCAGCGTCCTCGTCTTCCGCGCCGTCCGGCGCCGGCGTCGGCACCAT
GATCCAGGCCGACAGCAACAGCAACGCGCTGATCCTGAACGTGCCGGATCCGATGTATCAGAACCTGCGCAATGTGATCG
ACCTGCTGGACAAGCGCCGCGCCCAGGTTTACGTCGAGGCGCTGGTGATGGAGGTGACGGCCAGCCGCGCCACCAAGATC
GGCGTGCAATGGGCGGCCAACGTGCATGGCAACGGCCTGATCGGCAACAGCTTGCCTAGCCCGTCCAAGCCGCTTGTGCC
GGGCGGCTCCGGCGCTTCCGACACCCCCGGCACGGCATTGGGCTCCCTGGTCAGCAGCCTGACCGGCGGCGGCCTGACCG
CGGCCATCATCAATACCATCACCGTCGGCGGGCAACAGATTCCGACGCTGGGCCTGCTGGCCCAGGCCTTGGAGCAGGAG
GCGCAAGGCAATCTGGTGGCCAGTCCGCAACTGGTGACCATGGACAACGAGAAAGCCAAGATCGTGATCGGCCAGGAAAT
CGGGGTGCCCACCGCCACCTATCCCGCCGGCACCAACGGCACCTCCAACGCGCCTTACAGCACCTATGACCGCAAGACGG
TGGGCTTCGGCTTGGAGATCACTCCGCAGATATCCGAGGGCGGCACCATCCGGATGAAGATCAGCCAGGCGGCCGACTCC
ATCGACCAGACCACGCTGAGCGCGGCCGCCGGTCCGACGTTCAACCGGCGCACGCTGGACACGGTGGTGACTGTCGGCGA
CGGCGGCCTAGTGGCGCTGGGCGGCCTGACCCAGGAAACCACGAGCAACGCCGAGGACAAGGTGCCGCTGCTGGGAGACA
TCCCGGTCATCGGCAACCTGTTCAAGTACCAGGGCAAGGAGCGCAAGAAGACCAATCTGATGATCTTCATCCGTCCCACC
ATCATCCGCGACGAGATCGGCAACCGAGCGGTGGCCGGCGAGCGCTACGGCTATGTGATGGAGGATGCGGCGCGCAATGT
GGGCCGCAAGTTGCCGCTTGGCCTCAACGACCAGTTGAAGACGCCGGCCGCCGGCAGTATCCATGGCGCGTTGAACGCGC
TGGATACGTTGAACAAGTCGGAAGACAACACCAAGGCCAAGCAATGA

Upstream 100 bases:

>100_bases
AGCCGTGCCCGTTCCCATCCCGGGCCAGAACGCCGTCCCCGATGGCCAGCCTCAACCCGCGGTGGACCCTGCCGCGATGA
TTCGCCAATAAGAGAATGCA

Downstream 100 bases:

>100_bases
TGCAAGCCAAGTTCTCGACGCTGCTGCCCTTTCCCTTCGCCCGCGCCAACGGCGTCATCCTGCTGGACGGCGAGGCGGGG
CGGGTGCTGCTGCTGCGCGA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 708; Mature: 708

Protein sequence:

>708_residues
MRISKLVVALSLIYSCNLLAAPQNDTVMLNFVNADIETVVKAIGEISGKNFIIDPRVKGTVNIVSSRPVPRALSYQVLLS
SLRLQGFSAVEGNGVIKIVPEADAKLHAKASKRIPRGDGDRLITKVFALRNSNANQLVPVIRPLVSPNNTVAAYPQANAL
IVTDYADNIQRIESIIESVESAAAGDTVVIPVLFGSAVELANSLNKLMQEGGADGGKTTILADARANVLLVRADTPGKIG
KVKSLLKVLDQPSQAGSNVRVVYLKNAQASEVAKTLRLLLASEGSPVQTRSTINTATSTGGSASLMPSTTGSGSGASAQN
PVSSPDAGAAVAASSSSAPSGAGVGTMIQADSNSNALILNVPDPMYQNLRNVIDLLDKRRAQVYVEALVMEVTASRATKI
GVQWAANVHGNGLIGNSLPSPSKPLVPGGSGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQE
AQGNLVASPQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGGTIRMKISQAADS
IDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKVPLLGDIPVIGNLFKYQGKERKKTNLMIFIRPT
IIRDEIGNRAVAGERYGYVMEDAARNVGRKLPLGLNDQLKTPAAGSIHGALNALDTLNKSEDNTKAKQ

Sequences:

>Translated_708_residues
MRISKLVVALSLIYSCNLLAAPQNDTVMLNFVNADIETVVKAIGEISGKNFIIDPRVKGTVNIVSSRPVPRALSYQVLLS
SLRLQGFSAVEGNGVIKIVPEADAKLHAKASKRIPRGDGDRLITKVFALRNSNANQLVPVIRPLVSPNNTVAAYPQANAL
IVTDYADNIQRIESIIESVESAAAGDTVVIPVLFGSAVELANSLNKLMQEGGADGGKTTILADARANVLLVRADTPGKIG
KVKSLLKVLDQPSQAGSNVRVVYLKNAQASEVAKTLRLLLASEGSPVQTRSTINTATSTGGSASLMPSTTGSGSGASAQN
PVSSPDAGAAVAASSSSAPSGAGVGTMIQADSNSNALILNVPDPMYQNLRNVIDLLDKRRAQVYVEALVMEVTASRATKI
GVQWAANVHGNGLIGNSLPSPSKPLVPGGSGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQE
AQGNLVASPQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGGTIRMKISQAADS
IDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKVPLLGDIPVIGNLFKYQGKERKKTNLMIFIRPT
IIRDEIGNRAVAGERYGYVMEDAARNVGRKLPLGLNDQLKTPAAGSIHGALNALDTLNKSEDNTKAKQ
>Mature_708_residues
MRISKLVVALSLIYSCNLLAAPQNDTVMLNFVNADIETVVKAIGEISGKNFIIDPRVKGTVNIVSSRPVPRALSYQVLLS
SLRLQGFSAVEGNGVIKIVPEADAKLHAKASKRIPRGDGDRLITKVFALRNSNANQLVPVIRPLVSPNNTVAAYPQANAL
IVTDYADNIQRIESIIESVESAAAGDTVVIPVLFGSAVELANSLNKLMQEGGADGGKTTILADARANVLLVRADTPGKIG
KVKSLLKVLDQPSQAGSNVRVVYLKNAQASEVAKTLRLLLASEGSPVQTRSTINTATSTGGSASLMPSTTGSGSGASAQN
PVSSPDAGAAVAASSSSAPSGAGVGTMIQADSNSNALILNVPDPMYQNLRNVIDLLDKRRAQVYVEALVMEVTASRATKI
GVQWAANVHGNGLIGNSLPSPSKPLVPGGSGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQE
AQGNLVASPQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGGTIRMKISQAADS
IDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKVPLLGDIPVIGNLFKYQGKERKKTNLMIFIRPT
IIRDEIGNRAVAGERYGYVMEDAARNVGRKLPLGLNDQLKTPAAGSIHGALNALDTLNKSEDNTKAKQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=684, Percent_Identity=32.0175438596491, Blast_Score=278, Evalue=1e-75,
Organism=Escherichia coli, GI1789793, Length=299, Percent_Identity=27.7591973244147, Blast_Score=100, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 73469; Mature: 73469

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISKLVVALSLIYSCNLLAAPQNDTVMLNFVNADIETVVKAIGEISGKNFIIDPRVKGT
CCHHHHHHHHHHHHHCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCE
VNIVSSRPVPRALSYQVLLSSLRLQGFSAVEGNGVIKIVPEADAKLHAKASKRIPRGDGD
EEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCHHHHHHCCCCCCCH
RLITKVFALRNSNANQLVPVIRPLVSPNNTVAAYPQANALIVTDYADNIQRIESIIESVE
HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHH
SAAAGDTVVIPVLFGSAVELANSLNKLMQEGGADGGKTTILADARANVLLVRADTPGKIG
HHCCCCEEEEEEHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCHH
KVKSLLKVLDQPSQAGSNVRVVYLKNAQASEVAKTLRLLLASEGSPVQTRSTINTATSTG
HHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCCC
GSASLMPSTTGSGSGASAQNPVSSPDAGAAVAASSSSAPSGAGVGTMIQADSNSNALILN
CCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEE
VPDPMYQNLRNVIDLLDKRRAQVYVEALVMEVTASRATKIGVQWAANVHGNGLIGNSLPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEECCCCCC
PSKPLVPGGSGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQE
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AQGNLVASPQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEI
HCCCEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
TPQISEGGTIRMKISQAADSIDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQET
CCCCCCCCEEEEEEHHHHCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEECCCCCCC
TSNAEDKVPLLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNRAVAGERYGYVM
CCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECEEEHHHCCCCEECCCCCCHHH
EDAARNVGRKLPLGLNDQLKTPAAGSIHGALNALDTLNKSEDNTKAKQ
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRISKLVVALSLIYSCNLLAAPQNDTVMLNFVNADIETVVKAIGEISGKNFIIDPRVKGT
CCHHHHHHHHHHHHHCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCE
VNIVSSRPVPRALSYQVLLSSLRLQGFSAVEGNGVIKIVPEADAKLHAKASKRIPRGDGD
EEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCHHHHHHCCCCCCCH
RLITKVFALRNSNANQLVPVIRPLVSPNNTVAAYPQANALIVTDYADNIQRIESIIESVE
HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHH
SAAAGDTVVIPVLFGSAVELANSLNKLMQEGGADGGKTTILADARANVLLVRADTPGKIG
HHCCCCEEEEEEHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCHH
KVKSLLKVLDQPSQAGSNVRVVYLKNAQASEVAKTLRLLLASEGSPVQTRSTINTATSTG
HHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCCC
GSASLMPSTTGSGSGASAQNPVSSPDAGAAVAASSSSAPSGAGVGTMIQADSNSNALILN
CCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEE
VPDPMYQNLRNVIDLLDKRRAQVYVEALVMEVTASRATKIGVQWAANVHGNGLIGNSLPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEECCCCCC
PSKPLVPGGSGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQE
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AQGNLVASPQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEI
HCCCEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
TPQISEGGTIRMKISQAADSIDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQET
CCCCCCCCEEEEEEHHHHCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEECCCCCCC
TSNAEDKVPLLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNRAVAGERYGYVM
CCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECEEEHHHCCCCEECCCCCCHHH
EDAARNVGRKLPLGLNDQLKTPAAGSIHGALNALDTLNKSEDNTKAKQ
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]