| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is fbp [H]
Identifier: 34499246
GI number: 34499246
Start: 4087064
End: 4087390
Strand: Direct
Name: fbp [H]
Synonym: CV_3791
Alternate gene names: 34499246
Gene position: 4087064-4087390 (Clockwise)
Preceding gene: 34499243
Following gene: 34499248
Centisome position: 86.02
GC content: 65.44
Gene sequence:
>327_bases ATGAGCGAACTGATCATCGAAGAATTGCAGGTCGGCGAAGGCGCCGAAGCCGTCACCGGCCAGGAAGTCACCGTCCATTA CACCGGCTGGCTGACCGATGGCACCAAGTTCGACTCCAGCAAGGACCGCATGCAGCCGTTCAGCTTCCCGCTGGGCGCCG GCTACGTGATCAAGGGCTGGGACCAGGGCGTGCAGGGCATGAAGGTGGGCGGCAAGCGCAAGCTGACCATCCCGTCCGAG CTGGGTTACGGCGCGCGCGGCGCAGGCGGCGTGATTCCGCCGCACGCGACGCTGGTGTTCGAAGTGGAGCTGCTGCAGGT AGGCTGA
Upstream 100 bases:
>100_bases CGCTCTGATTTTCGTTATATGCCACACAGGGGAAAACACAAATCGGCCGGCCGGCTGCTACAATCGCGCGGTCAACACCC TACCCGTGGAAGGAAATACC
Downstream 100 bases:
>100_bases TCCGCCCTGACGGCAAAAAGGCCATCCGCAAGGATGGCCTTTTCATTTGCATTGCCGGATGCTTATTTCTTCGCGCAGGA CATGCGGCGGCGTTTGAGCC
Product: FkbP-type peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: Peptidyl-prolyl cis-trans isomerase; PPIase; Rotamase [H]
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MSELIIEELQVGEGAEAVTGQEVTVHYTGWLTDGTKFDSSKDRMQPFSFPLGAGYVIKGWDQGVQGMKVGGKRKLTIPSE LGYGARGAGGVIPPHATLVFEVELLQVG
Sequences:
>Translated_108_residues MSELIIEELQVGEGAEAVTGQEVTVHYTGWLTDGTKFDSSKDRMQPFSFPLGAGYVIKGWDQGVQGMKVGGKRKLTIPSE LGYGARGAGGVIPPHATLVFEVELLQVG >Mature_107_residues SELIIEELQVGEGAEAVTGQEVTVHYTGWLTDGTKFDSSKDRMQPFSFPLGAGYVIKGWDQGVQGMKVGGKRKLTIPSEL GYGARGAGGVIPPHATLVFEVELLQVG
Specific function: PPIases accelerate the folding of proteins [H]
COG id: COG0545
COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 1
Gene ontology:
Cell location: Cytoplasm And Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase FKBP-type domain [H]
Homologues:
Organism=Homo sapiens, GI17149836, Length=103, Percent_Identity=54.3689320388349, Blast_Score=111, Evalue=1e-25, Organism=Homo sapiens, GI4503725, Length=103, Percent_Identity=54.3689320388349, Blast_Score=111, Evalue=1e-25, Organism=Homo sapiens, GI206725530, Length=88, Percent_Identity=65.9090909090909, Blast_Score=110, Evalue=2e-25, Organism=Homo sapiens, GI17149844, Length=88, Percent_Identity=65.9090909090909, Blast_Score=110, Evalue=2e-25, Organism=Homo sapiens, GI17149842, Length=88, Percent_Identity=65.9090909090909, Blast_Score=110, Evalue=2e-25, Organism=Homo sapiens, GI4758380, Length=103, Percent_Identity=49.5145631067961, Blast_Score=102, Evalue=7e-23, Organism=Homo sapiens, GI4503729, Length=96, Percent_Identity=56.25, Blast_Score=101, Evalue=1e-22, Organism=Homo sapiens, GI224809331, Length=98, Percent_Identity=51.0204081632653, Blast_Score=92, Evalue=1e-19, Organism=Homo sapiens, GI192448443, Length=109, Percent_Identity=42.2018348623853, Blast_Score=89, Evalue=9e-19, Organism=Homo sapiens, GI224809329, Length=97, Percent_Identity=51.5463917525773, Blast_Score=89, Evalue=1e-18, Organism=Homo sapiens, GI224809327, Length=97, Percent_Identity=51.5463917525773, Blast_Score=89, Evalue=1e-18, Organism=Homo sapiens, GI4758384, Length=97, Percent_Identity=51.5463917525773, Blast_Score=89, Evalue=1e-18, Organism=Homo sapiens, GI8923659, Length=91, Percent_Identity=49.4505494505495, Blast_Score=82, Evalue=6e-17, Organism=Homo sapiens, GI33469985, Length=85, Percent_Identity=49.4117647058824, Blast_Score=81, Evalue=2e-16, Organism=Homo sapiens, GI206725547, Length=110, Percent_Identity=42.7272727272727, Blast_Score=75, Evalue=8e-15, Organism=Homo sapiens, GI4503727, Length=96, Percent_Identity=42.7083333333333, Blast_Score=74, Evalue=4e-14, Organism=Homo sapiens, GI31317231, Length=111, Percent_Identity=43.2432432432432, Blast_Score=73, Evalue=4e-14, Organism=Homo sapiens, GI150010552, Length=112, Percent_Identity=37.5, Blast_Score=72, Evalue=9e-14, Organism=Homo sapiens, GI7706131, Length=89, Percent_Identity=41.5730337078652, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87082390, Length=96, Percent_Identity=56.25, Blast_Score=100, Evalue=3e-23, Organism=Escherichia coli, GI1789745, Length=104, Percent_Identity=47.1153846153846, Blast_Score=76, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71993519, Length=90, Percent_Identity=61.1111111111111, Blast_Score=106, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17540882, Length=109, Percent_Identity=49.5412844036697, Blast_Score=105, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17561782, Length=96, Percent_Identity=54.1666666666667, Blast_Score=94, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71993555, Length=69, Percent_Identity=55.0724637681159, Blast_Score=77, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561778, Length=89, Percent_Identity=43.8202247191011, Blast_Score=71, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17561780, Length=99, Percent_Identity=38.3838383838384, Blast_Score=68, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17506167, Length=89, Percent_Identity=40.4494382022472, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17506169, Length=89, Percent_Identity=40.4494382022472, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6320727, Length=105, Percent_Identity=59.0476190476191, Blast_Score=112, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6324194, Length=114, Percent_Identity=52.6315789473684, Blast_Score=110, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6323566, Length=104, Percent_Identity=42.3076923076923, Blast_Score=84, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6323482, Length=104, Percent_Identity=43.2692307692308, Blast_Score=82, Evalue=1e-17, Organism=Drosophila melanogaster, GI281363946, Length=109, Percent_Identity=59.6330275229358, Blast_Score=127, Evalue=1e-30, Organism=Drosophila melanogaster, GI17352457, Length=109, Percent_Identity=59.6330275229358, Blast_Score=127, Evalue=1e-30, Organism=Drosophila melanogaster, GI24655568, Length=89, Percent_Identity=59.5505617977528, Blast_Score=114, Evalue=1e-26, Organism=Drosophila melanogaster, GI24647110, Length=97, Percent_Identity=55.6701030927835, Blast_Score=100, Evalue=2e-22, Organism=Drosophila melanogaster, GI24583150, Length=100, Percent_Identity=51, Blast_Score=96, Evalue=5e-21, Organism=Drosophila melanogaster, GI21356629, Length=89, Percent_Identity=65.1685393258427, Blast_Score=94, Evalue=2e-20,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001179 [H]
Pfam domain/function: PF00254 FKBP_C [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 11522; Mature: 11391
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS50059 FKBP_PPIASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELIIEELQVGEGAEAVTGQEVTVHYTGWLTDGTKFDSSKDRMQPFSFPLGAGYVIKGW CCCHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECC DQGVQGMKVGGKRKLTIPSELGYGARGAGGVIPPHATLVFEVELLQVG CCCCCCEECCCEEEEECCHHCCCCCCCCCCCCCCCEEEEEEEEEEECC >Mature Secondary Structure SELIIEELQVGEGAEAVTGQEVTVHYTGWLTDGTKFDSSKDRMQPFSFPLGAGYVIKGW CCHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECC DQGVQGMKVGGKRKLTIPSELGYGARGAGGVIPPHATLVFEVELLQVG CCCCCCEECCCEEEEECCHHCCCCCCCCCCCCCCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]