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The map label for this gene is rpoZ

Identifier: 34499224

GI number: 34499224

Start: 4067989

End: 4068195

Strand: Reverse

Name: rpoZ

Synonym: CV_3769

Alternate gene names: 34499224

Gene position: 4068195-4067989 (Counterclockwise)

Preceding gene: 34499225

Following gene: 34499223

Centisome position: 85.63

GC content: 66.67

Gene sequence:

>207_bases
ATGGCCCGTATTACCGTTGACGACTGCCTGGACCGCATCCAGAACCGTTTTGACCTGACCCTGGCCGCCGCTTACCGCGC
CCGCCAAGTGGCTTCCGGCGCCAGCGCCTTTGTCGAGCCGGGCCGCCACAAGCCGACCGTGATCGCCCTGCGTGAAATTG
CCGCCGGCCACGTCGGCAAGGAAGTCCTCAACCGCGGCAAGGCCTGA

Upstream 100 bases:

>100_bases
GCACCGCCGGCGCGAAATGAAAATAGTTCCGTCCCGCCGTGCCGGACGGGACGAAAATCGATATAGTGAACCCTGTAACC
GTCATTAGCTGAGAGAGATC

Downstream 100 bases:

>100_bases
TTGACGCAGTACGGAGCGCGAAGATGGGCACCGGCATTGAGACAGGCATCGACTACAACGTCCTGATCGAGTCCGAAGCG
GCGGCATTCCTGGAGAGCGC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MARITVDDCLDRIQNRFDLTLAAAYRARQVASGASAFVEPGRHKPTVIALREIAAGHVGKEVLNRGKA

Sequences:

>Translated_68_residues
MARITVDDCLDRIQNRFDLTLAAAYRARQVASGASAFVEPGRHKPTVIALREIAAGHVGKEVLNRGKA
>Mature_67_residues
ARITVDDCLDRIQNRFDLTLAAAYRARQVASGASAFVEPGRHKPTVIALREIAAGHVGKEVLNRGKA

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=49.2307692307692, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CHRVO (Q7NRL2)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903439.1
- GeneID:   2548581
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3769
- NMPDR:   fig|243365.1.peg.3769
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- PhylomeDB:   Q7NRL2
- BioCyc:   CVIO243365:CV_3769-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7374; Mature: 7242

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVDDCLDRIQNRFDLTLAAAYRARQVASGASAFVEPGRHKPTVIALREIAAGHVGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCHHHH
EVLNRGKA
HHHHCCCC
>Mature Secondary Structure 
ARITVDDCLDRIQNRFDLTLAAAYRARQVASGASAFVEPGRHKPTVIALREIAAGHVGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCHHHH
EVLNRGKA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782