| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yceG [C]
Identifier: 34499179
GI number: 34499179
Start: 4022141
End: 4023133
Strand: Reverse
Name: yceG [C]
Synonym: CV_3724
Alternate gene names: 34499179
Gene position: 4023133-4022141 (Counterclockwise)
Preceding gene: 34499187
Following gene: 34499178
Centisome position: 84.68
GC content: 64.95
Gene sequence:
>993_bases ATGAAGAAAATTTCCCGCGTTCTGTTGCTGCTGCTGTTGTGCGCGGCCGGCTGGCTGGGCTGGGCGCTGCTGCTGCCCGT CGACATGCCCGCAGGCGGCTACAAGCTGCTGGTCGGCCCCAACCGCACGATGAAGCAGATCGCGCATGCGCTGGCGAAGG ACGGCGCGATACGCAATGGCCAGCTGATGATCGCGCTGGCGCGGATTTCCGGTTCCGATCGCAAGGTCAAGGCCGGCCTG TACCGGCTGGAGGGCGGGCAGTCGATGCTGGACGTGCTGGACCGGCTGGTGCAGGGCCATCCGGACGAGGCCAGCCTGAC CGCGATAGAAGGCTGGACTTTCCGCCAGCTGCGCCAGGCGGTGGACCGCAATCCGGATATCAAGCACGACGCGCTGAAGA TGAGCAATGCCGAGCTGATGCATCAGCTGGACCTGCCCGACATCAATCCCGAGGGCTTGTTCTTTCCCAGCACCTATCTG TTCACGCCGGGCTCTTCCGATATCGATCTGTACCGGCAGGCCTTTTCGACGATGGCGCAGCAGCTGGACGCCGCCTGGGC GGCGCGCAAGCCGGGCCTGCCTTACGCCACGCCGTACGAGTTGTTGACCATGGCCAGCCTGATCGAGAAGGAAACCTCCA GCGAGGCCGACCGGCCGATGGTGGCGGCGGTGTTCGTCAACCGGCTGAAGAAGGGCATGCGGCTGCAGACCGATCCCTCG GTGATCTACGGCATGGGCAGCAGCTACCAGGGCAATATCGCCAAGGCCGACTTGCGCCGCGATACGCCGTACAATACCTA TACCCGCGCCGGCCTGACGCCGACGCCGATCTCGCTGCCGGGCAAGGCCGCGCTGTACGCGGCGGCCCAGCCGGCCGAAA CCGACGCGCTGTATTTCGTCGCCCGCGGCGACGGCAGCTCCCAGTTTTCCAGCACCCTGGACGAGCATAACCAGGCGGTG CGCAAATACATCCTGAAGAAAGGCCAGCAATGA
Upstream 100 bases:
>100_bases TGCGGCCAGTGCAAGCTGGCATGTCGGACAGCCTCGCTTGCTGGTATGATTCCGCCTTCGTCGCGATGGCGGCCGTCAAC CTGGATTTGCGAAGCGTTAG
Downstream 100 bases:
>100_bases GCAGTGAGGTCCGACGCGGCCGTTTCATCACGCTGGAAGGCATAGACGGCGCCGGCAAGAGCACCCATCTTTCCTTCATC CGCGACTGGCTGGCCCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MKKISRVLLLLLLCAAGWLGWALLLPVDMPAGGYKLLVGPNRTMKQIAHALAKDGAIRNGQLMIALARISGSDRKVKAGL YRLEGGQSMLDVLDRLVQGHPDEASLTAIEGWTFRQLRQAVDRNPDIKHDALKMSNAELMHQLDLPDINPEGLFFPSTYL FTPGSSDIDLYRQAFSTMAQQLDAAWAARKPGLPYATPYELLTMASLIEKETSSEADRPMVAAVFVNRLKKGMRLQTDPS VIYGMGSSYQGNIAKADLRRDTPYNTYTRAGLTPTPISLPGKAALYAAAQPAETDALYFVARGDGSSQFSSTLDEHNQAV RKYILKKGQQ
Sequences:
>Translated_330_residues MKKISRVLLLLLLCAAGWLGWALLLPVDMPAGGYKLLVGPNRTMKQIAHALAKDGAIRNGQLMIALARISGSDRKVKAGL YRLEGGQSMLDVLDRLVQGHPDEASLTAIEGWTFRQLRQAVDRNPDIKHDALKMSNAELMHQLDLPDINPEGLFFPSTYL FTPGSSDIDLYRQAFSTMAQQLDAAWAARKPGLPYATPYELLTMASLIEKETSSEADRPMVAAVFVNRLKKGMRLQTDPS VIYGMGSSYQGNIAKADLRRDTPYNTYTRAGLTPTPISLPGKAALYAAAQPAETDALYFVARGDGSSQFSSTLDEHNQAV RKYILKKGQQ >Mature_330_residues MKKISRVLLLLLLCAAGWLGWALLLPVDMPAGGYKLLVGPNRTMKQIAHALAKDGAIRNGQLMIALARISGSDRKVKAGL YRLEGGQSMLDVLDRLVQGHPDEASLTAIEGWTFRQLRQAVDRNPDIKHDALKMSNAELMHQLDLPDINPEGLFFPSTYL FTPGSSDIDLYRQAFSTMAQQLDAAWAARKPGLPYATPYELLTMASLIEKETSSEADRPMVAAVFVNRLKKGMRLQTDPS VIYGMGSSYQGNIAKADLRRDTPYNTYTRAGLTPTPISLPGKAALYAAAQPAETDALYFVARGDGSSQFSSTLDEHNQAV RKYILKKGQQ
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=285, Percent_Identity=41.0526315789474, Blast_Score=204, Evalue=6e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 36228; Mature: 36228
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKISRVLLLLLLCAAGWLGWALLLPVDMPAGGYKLLVGPNRTMKQIAHALAKDGAIRNG CHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC QLMIALARISGSDRKVKAGLYRLEGGQSMLDVLDRLVQGHPDEASLTAIEGWTFRQLRQA EEEEEEEECCCCCCEEHHHHEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH VDRNPDIKHDALKMSNAELMHQLDLPDINPEGLFFPSTYLFTPGSSDIDLYRQAFSTMAQ HCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCEECCCEEEECCCCCCHHHHHHHHHHHHH QLDAAWAARKPGLPYATPYELLTMASLIEKETSSEADRPMVAAVFVNRLKKGMRLQTDPS HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEECCCCC VIYGMGSSYQGNIAKADLRRDTPYNTYTRAGLTPTPISLPGKAALYAAAQPAETDALYFV EEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHEEECCCCCCCCEEEEE ARGDGSSQFSSTLDEHNQAVRKYILKKGQQ EECCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKISRVLLLLLLCAAGWLGWALLLPVDMPAGGYKLLVGPNRTMKQIAHALAKDGAIRNG CHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC QLMIALARISGSDRKVKAGLYRLEGGQSMLDVLDRLVQGHPDEASLTAIEGWTFRQLRQA EEEEEEEECCCCCCEEHHHHEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH VDRNPDIKHDALKMSNAELMHQLDLPDINPEGLFFPSTYLFTPGSSDIDLYRQAFSTMAQ HCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCEECCCEEEECCCCCCHHHHHHHHHHHHH QLDAAWAARKPGLPYATPYELLTMASLIEKETSSEADRPMVAAVFVNRLKKGMRLQTDPS HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEECCCCC VIYGMGSSYQGNIAKADLRRDTPYNTYTRAGLTPTPISLPGKAALYAAAQPAETDALYFV EEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHEEECCCCCCCCEEEEE ARGDGSSQFSSTLDEHNQAVRKYILKKGQQ EECCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]