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The map label for this gene is yeaM [H]

Identifier: 34499168

GI number: 34499168

Start: 4014654

End: 4015406

Strand: Reverse

Name: yeaM [H]

Synonym: CV_3713

Alternate gene names: 34499168

Gene position: 4015406-4014654 (Counterclockwise)

Preceding gene: 34499173

Following gene: 34499167

Centisome position: 84.52

GC content: 70.12

Gene sequence:

>753_bases
ATGGATGCCGTCGATCTGCCTTTTCATTGCCAGGCGCTGCAAGGGGTGTCGCGCTGCGGGACGGCCAGCCATGTCCACGC
GGTCGGCCAGCTGATCTATCTGCGCCGCGGCGCGATGCTGTGCCAGAGCGAGACCATGCGCTGGCTGATGGCGGCGGGGC
AGGTCGGCTGGATTCCCGCCGGCGTCGCGCACAGCGCCGAACCGTTGGCCGAGCTCTATGGCGTGACGGCCTATGCCGAT
AGCGCGGCGTATCCGGATCTGCCCGCCGAGGTGCGGGTGATGCCGGCCGGGGGCTTGATGGGATTGCTGCTGGAGCGGCA
ACTGCGCTACGAGGCGGAGCCTTGGCCCGGCCGCCGGCAACGGCTGGCCGGGGCGATCGTCGACGAGCTGCTGCAATTGG
TGCCCTTGCCGCAGCAGCTGCCCTTGCCGGCCGAACGCCGTCTGCGCGCGCTGTGCCGGCGGGTGCTGGCGGATCTGGGG
CGGGGATGGCTGCTGGACGAGCTGGCGGTCGCGCATGGGTTTTCCCGCGCCAGCCTGACGCGGGCCTTCGCCAGGGAAAC
CGGCGTATCGTTCGGCCATTGGCTGGCGCAGGCCAGGCTGTTGGAAGCGGTGCGCCTGCTCAGCGGCGGCGCGATGGTCG
GCGAAACCGCCTTACAGGTAGGGTATCAGTCCCCGAGCGCGTTTTGCGCGGCGTTCCGTCGCCATCTGGGTATGGCGCCG
GGCGAACTCCAGCGTGCTCAGGCCCGCGTTTGA

Upstream 100 bases:

>100_bases
TATGGCGGCGCTGGCCGATGGTGGATGGAGACACAGTAGGCGCTTTACGGTTTGATGTGTTAGCGGCAAAGTATCAAGTA
TTGTCGCAATCGGATCAATC

Downstream 100 bases:

>100_bases
ATCCAGCATGGAGGGGCGCGCGGCGGCCGCTTGAGGCGCAGACGGCGCCTGCAGGTTGTTCAGCAGCCGGCGGAACAGCA
TTTCCGCCAGTTCGCGCTGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDAVDLPFHCQALQGVSRCGTASHVHAVGQLIYLRRGAMLCQSETMRWLMAAGQVGWIPAGVAHSAEPLAELYGVTAYAD
SAAYPDLPAEVRVMPAGGLMGLLLERQLRYEAEPWPGRRQRLAGAIVDELLQLVPLPQQLPLPAERRLRALCRRVLADLG
RGWLLDELAVAHGFSRASLTRAFARETGVSFGHWLAQARLLEAVRLLSGGAMVGETALQVGYQSPSAFCAAFRRHLGMAP
GELQRAQARV

Sequences:

>Translated_250_residues
MDAVDLPFHCQALQGVSRCGTASHVHAVGQLIYLRRGAMLCQSETMRWLMAAGQVGWIPAGVAHSAEPLAELYGVTAYAD
SAAYPDLPAEVRVMPAGGLMGLLLERQLRYEAEPWPGRRQRLAGAIVDELLQLVPLPQQLPLPAERRLRALCRRVLADLG
RGWLLDELAVAHGFSRASLTRAFARETGVSFGHWLAQARLLEAVRLLSGGAMVGETALQVGYQSPSAFCAAFRRHLGMAP
GELQRAQARV
>Mature_250_residues
MDAVDLPFHCQALQGVSRCGTASHVHAVGQLIYLRRGAMLCQSETMRWLMAAGQVGWIPAGVAHSAEPLAELYGVTAYAD
SAAYPDLPAEVRVMPAGGLMGLLLERQLRYEAEPWPGRRQRLAGAIVDELLQLVPLPQQLPLPAERRLRALCRRVLADLG
RGWLLDELAVAHGFSRASLTRAFARETGVSFGHWLAQARLLEAVRLLSGGAMVGETALQVGYQSPSAFCAAFRRHLGMAP
GELQRAQARV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=230, Percent_Identity=29.1304347826087, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 27153; Mature: 27153

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVDLPFHCQALQGVSRCGTASHVHAVGQLIYLRRGAMLCQSETMRWLMAAGQVGWIPA
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GVAHSAEPLAELYGVTAYADSAAYPDLPAEVRVMPAGGLMGLLLERQLRYEAEPWPGRRQ
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHH
RLAGAIVDELLQLVPLPQQLPLPAERRLRALCRRVLADLGRGWLLDELAVAHGFSRASLT
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
RAFARETGVSFGHWLAQARLLEAVRLLSGGAMVGETALQVGYQSPSAFCAAFRRHLGMAP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
GELQRAQARV
CHHHHHHCCC
>Mature Secondary Structure
MDAVDLPFHCQALQGVSRCGTASHVHAVGQLIYLRRGAMLCQSETMRWLMAAGQVGWIPA
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GVAHSAEPLAELYGVTAYADSAAYPDLPAEVRVMPAGGLMGLLLERQLRYEAEPWPGRRQ
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHH
RLAGAIVDELLQLVPLPQQLPLPAERRLRALCRRVLADLGRGWLLDELAVAHGFSRASLT
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
RAFARETGVSFGHWLAQARLLEAVRLLSGGAMVGETALQVGYQSPSAFCAAFRRHLGMAP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
GELQRAQARV
CHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]