| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is ttuD [H]
Identifier: 34499115
GI number: 34499115
Start: 3959557
End: 3960819
Strand: Reverse
Name: ttuD [H]
Synonym: CV_3660
Alternate gene names: 34499115
Gene position: 3960819-3959557 (Counterclockwise)
Preceding gene: 34499118
Following gene: 34499114
Centisome position: 83.37
GC content: 72.05
Gene sequence:
>1263_bases ATGTCCGATCTCGATCCGCAATCCACGCTCCGCCGCCTGTTCGCCGCCGCCGTCGCCAGCGCGATGCCGGAGCGGCTGGC CGACCATCTGCCGCCGCCGCCTCGGGGCCGCACCGTGGTCGTCGGCGCCGGCAAGGCCGCCGCGGCGATGGCGCGGGCGC TGGAGCAAGCCTGGCCGGGCGAGCTGTCCGGCGTGGTGGCGACGCGCTACGGCCACGCGGTGGCGACCGAACGGATAGAA GTGCTGGAGGCGTCGCACCCGGTGCAGGACGAGGCGGGCTGCGCCGCCGCGCGGCGGATGCTGCAAGCGGTGAGCGGGCT GACGGCGGATGATCTGGTGATCTGCCTGCTGTCCGGCGGCGGCTCCGCCTTGTTGGCTTTGCCGGCGCATGGCGTCAGCC TGGAAGACAAGCAGGAGGTTAGCCGGCAGTTGCTGGCCTGCGGCGCCGGCATCGACGAGATGAACGCGCTGCGCAAGCAT GTGTCCGCCATCAAGGGCGGGCGGCTGGCGCTGGCCTGCGCGCCGGCCAAGCTGGTGACGCTGGCGATTTCCGACGTGGT GGGGGACGATCCGGCAGTCATCGCTTCCGGGCCGACGGCGGCGGATCCCAGCACCTATGCCGACGCGCGCGCCGTGGTCG CCAAATATGGTTTGACCTTGCCGCGGGCAGTCACTGCGTTGCTGGCGGCGGAGCCGGACGAAACCCCCAAGCCGGGCGAT GCCAGGCTGGCGCATGCCGAGTACCGGCTGATCGCGACGCCGCAGCTGGCTTTGCGGGCGGCCGCCACCGAGGCGGAGCG GCTGGGCCTGAACGTGCTGCAGCTCGGCGACAGCATAGAGGGCGAGGCGCGCGAGGCGGCCAAGGTGCACGCCGGCATCG CGCGGCAGATCGCCGCGCACGATTCGCCTGTGGCCAGGCCGGCGCTGATCCTGTCGGGCGGCGAAACCACGGTGACGCTG CGGGGCAAGGGCAGAGGCGGGCGCAACAGCGAATTCCTGCTGGCGCTGGCCATCGCGCTGGACGGCCTGCCCGGCGTGTA CGCGCTGGCGGCGGACACCGACGGCATTGACGGCAGCGAGGACAACGCCGGCGCGCTGATTTCGCCCGATACGCTGGCGC GCGCGGCGGCGCTGGGCGTGAATGCCGGCGCGCGGCTGACCGACAATGACGGCTACGGCTTCTTCGCGGCGCTGGGCGAT CTGCTGGTCACCGGCCCCACCCATACCAACGTCAACGATTTTCGCGCGATCCTGCTGCGGTAA
Upstream 100 bases:
>100_bases GGCGGGGCGTTGGAATCGCCGCCATTCTAACGCGCGGCGGCGGGGGTGTCAGCCGCCGCCGGCTGCGGCAGAATGGCGTC ATCGCCACCGGGGAAACGCC
Downstream 100 bases:
>100_bases CGGAGTCGCGGCCAGCCGCGAGTCGGAACGCCGCCCGGCTCTCCACGATCCAGGCCATGCGATGCATGGCCTTTTTTGCG CGCGCATTCATGACATGGAG
Product: hydroxypyruvate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MSDLDPQSTLRRLFAAAVASAMPERLADHLPPPPRGRTVVVGAGKAAAAMARALEQAWPGELSGVVATRYGHAVATERIE VLEASHPVQDEAGCAAARRMLQAVSGLTADDLVICLLSGGGSALLALPAHGVSLEDKQEVSRQLLACGAGIDEMNALRKH VSAIKGGRLALACAPAKLVTLAISDVVGDDPAVIASGPTAADPSTYADARAVVAKYGLTLPRAVTALLAAEPDETPKPGD ARLAHAEYRLIATPQLALRAAATEAERLGLNVLQLGDSIEGEAREAAKVHAGIARQIAAHDSPVARPALILSGGETTVTL RGKGRGGRNSEFLLALAIALDGLPGVYALAADTDGIDGSEDNAGALISPDTLARAAALGVNAGARLTDNDGYGFFAALGD LLVTGPTHTNVNDFRAILLR
Sequences:
>Translated_420_residues MSDLDPQSTLRRLFAAAVASAMPERLADHLPPPPRGRTVVVGAGKAAAAMARALEQAWPGELSGVVATRYGHAVATERIE VLEASHPVQDEAGCAAARRMLQAVSGLTADDLVICLLSGGGSALLALPAHGVSLEDKQEVSRQLLACGAGIDEMNALRKH VSAIKGGRLALACAPAKLVTLAISDVVGDDPAVIASGPTAADPSTYADARAVVAKYGLTLPRAVTALLAAEPDETPKPGD ARLAHAEYRLIATPQLALRAAATEAERLGLNVLQLGDSIEGEAREAAKVHAGIARQIAAHDSPVARPALILSGGETTVTL RGKGRGGRNSEFLLALAIALDGLPGVYALAADTDGIDGSEDNAGALISPDTLARAAALGVNAGARLTDNDGYGFFAALGD LLVTGPTHTNVNDFRAILLR >Mature_419_residues SDLDPQSTLRRLFAAAVASAMPERLADHLPPPPRGRTVVVGAGKAAAAMARALEQAWPGELSGVVATRYGHAVATERIEV LEASHPVQDEAGCAAARRMLQAVSGLTADDLVICLLSGGGSALLALPAHGVSLEDKQEVSRQLLACGAGIDEMNALRKHV SAIKGGRLALACAPAKLVTLAISDVVGDDPAVIASGPTAADPSTYADARAVVAKYGLTLPRAVTALLAAEPDETPKPGDA RLAHAEYRLIATPQLALRAAATEAERLGLNVLQLGDSIEGEAREAAKVHAGIARQIAAHDSPVARPALILSGGETTVTLR GKGRGGRNSEFLLALAIALDGLPGVYALAADTDGIDGSEDNAGALISPDTLARAAALGVNAGARLTDNDGYGFFAALGDL LVTGPTHTNVNDFRAILLR
Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]
COG id: COG2379
COG function: function code G; Putative glycerate kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31543063, Length=485, Percent_Identity=34.8453608247423, Blast_Score=199, Evalue=4e-51, Organism=Caenorhabditis elegans, GI193205461, Length=415, Percent_Identity=31.3253012048193, Blast_Score=149, Evalue=3e-36, Organism=Drosophila melanogaster, GI19920578, Length=497, Percent_Identity=28.9738430583501, Blast_Score=141, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007835 [H]
Pfam domain/function: PF05161 MOFRL [H]
EC number: =1.1.1.81 [H]
Molecular weight: Translated: 42911; Mature: 42780
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLDPQSTLRRLFAAAVASAMPERLADHLPPPPRGRTVVVGAGKAAAAMARALEQAWPG CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCC ELSGVVATRYGHAVATERIEVLEASHPVQDEAGCAAARRMLQAVSGLTADDLVICLLSGG CCCCHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC GSALLALPAHGVSLEDKQEVSRQLLACGAGIDEMNALRKHVSAIKGGRLALACAPAKLVT CCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHH LAISDVVGDDPAVIASGPTAADPSTYADARAVVAKYGLTLPRAVTALLAAEPDETPKPGD HHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC ARLAHAEYRLIATPQLALRAAATEAERLGLNVLQLGDSIEGEAREAAKVHAGIARQIAAH CEEEECCEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHC DSPVARPALILSGGETTVTLRGKGRGGRNSEFLLALAIALDGLPGVYALAADTDGIDGSE CCCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCC DNAGALISPDTLARAAALGVNAGARLTDNDGYGFFAALGDLLVTGPTHTNVNDFRAILLR CCCCCEECCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHEEECCCCCCHHHHHHHCCC >Mature Secondary Structure SDLDPQSTLRRLFAAAVASAMPERLADHLPPPPRGRTVVVGAGKAAAAMARALEQAWPG CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCC ELSGVVATRYGHAVATERIEVLEASHPVQDEAGCAAARRMLQAVSGLTADDLVICLLSGG CCCCHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC GSALLALPAHGVSLEDKQEVSRQLLACGAGIDEMNALRKHVSAIKGGRLALACAPAKLVT CCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHH LAISDVVGDDPAVIASGPTAADPSTYADARAVVAKYGLTLPRAVTALLAAEPDETPKPGD HHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC ARLAHAEYRLIATPQLALRAAATEAERLGLNVLQLGDSIEGEAREAAKVHAGIARQIAAH CEEEECCEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHC DSPVARPALILSGGETTVTLRGKGRGGRNSEFLLALAIALDGLPGVYALAADTDGIDGSE CCCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCC DNAGALISPDTLARAAALGVNAGARLTDNDGYGFFAALGDLLVTGPTHTNVNDFRAILLR CCCCCEECCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHEEECCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7592429 [H]