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The map label for this gene is yeaM [H]

Identifier: 34498935

GI number: 34498935

Start: 3775640

End: 3776461

Strand: Direct

Name: yeaM [H]

Synonym: CV_3480

Alternate gene names: 34498935

Gene position: 3775640-3776461 (Clockwise)

Preceding gene: 34498930

Following gene: 34498938

Centisome position: 79.47

GC content: 68.13

Gene sequence:

>822_bases
ATGGACGGCTCGGAAAACGACTATTTCGCCGGCGACCAGGGCCTGCCGGAGCCGGCGCCGCTGATCTTCCGCTTCCACCG
CTTCACGCCGAAAAGCGAGTTCGCCCGCCATCGCCATCGTTGGGGACAGCTGAGCCGCATCAACCTGGGCATGATGGAGC
TGCTGCTGGACGACAGGCGGGTGGTGGCCACCGCGCAATACCTGCTGTGGACGCCGCCGGCGGAGCCGCACGCGGCCTAC
ATCCACCAGGCGATGCATTACACCTCGATCTACGTCGGCGACGAGGTGGCCGCGCGGCTGCCGCTGTCGACCTGTCTGCT
GGAGCAGACGCCGCTGGTGCGCGCGCTGCTGGACGACTTCGGCCAGCGCCAGATCACGACGCCGACCGATCCCTGGGACA
TCCGCCAGGCCGAGCTGCTATGCCGGCGCATCCTGCAATCCGGACGCGAGGCCAGCTACCTGCCCGACAGCCGGCAGCGG
TTGCTGCAGCCGATACTGGACGCCATACGCCAGGACCCGGCCGACACCACGCCGCTGAAAGCCTGGGCGGAACGGGTGTT
CAGCACCGAGCGCACGCTGGCGCGGCTGTTCCAGCGCGAGCTGGGCATGAGCTTCGGTCAATGGCGCAACCGGGCGCGGC
TGCTGGAAGCCTTGTCCGGGCTCAAGCAGGGCGACAGCGTGCAGGCCATCTCCGCTCGGCTGGGCTACGCGACGCCATCG
GCCTTCATCGCCATGTTCCAGAAACATCTGGGCGACTCGCCGGAACGCTACCGCCGCCAACTGCTGGAAAGCGGCGGCTG
GCCCGACGAATTCAGCGCTTGA

Upstream 100 bases:

>100_bases
CCATCACAGCCTCCTTAGACTCTATCCGGTCTATTGTAGAACCGTCTGTTATGGACGATATAATGCAAAACGGACAAATC
ACTGAGGCAAACCGGACAAT

Downstream 100 bases:

>100_bases
ACAGCGCCAGCGCCAGCTCGCGCTGAACCGCGTGGTCGACGATGGGATGCGGATAGTCGCGTCCCAGCCGCACGCCGGCT
GACATCAGTTGTTCCGGCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDGSENDYFAGDQGLPEPAPLIFRFHRFTPKSEFARHRHRWGQLSRINLGMMELLLDDRRVVATAQYLLWTPPAEPHAAY
IHQAMHYTSIYVGDEVAARLPLSTCLLEQTPLVRALLDDFGQRQITTPTDPWDIRQAELLCRRILQSGREASYLPDSRQR
LLQPILDAIRQDPADTTPLKAWAERVFSTERTLARLFQRELGMSFGQWRNRARLLEALSGLKQGDSVQAISARLGYATPS
AFIAMFQKHLGDSPERYRRQLLESGGWPDEFSA

Sequences:

>Translated_273_residues
MDGSENDYFAGDQGLPEPAPLIFRFHRFTPKSEFARHRHRWGQLSRINLGMMELLLDDRRVVATAQYLLWTPPAEPHAAY
IHQAMHYTSIYVGDEVAARLPLSTCLLEQTPLVRALLDDFGQRQITTPTDPWDIRQAELLCRRILQSGREASYLPDSRQR
LLQPILDAIRQDPADTTPLKAWAERVFSTERTLARLFQRELGMSFGQWRNRARLLEALSGLKQGDSVQAISARLGYATPS
AFIAMFQKHLGDSPERYRRQLLESGGWPDEFSA
>Mature_273_residues
MDGSENDYFAGDQGLPEPAPLIFRFHRFTPKSEFARHRHRWGQLSRINLGMMELLLDDRRVVATAQYLLWTPPAEPHAAY
IHQAMHYTSIYVGDEVAARLPLSTCLLEQTPLVRALLDDFGQRQITTPTDPWDIRQAELLCRRILQSGREASYLPDSRQR
LLQPILDAIRQDPADTTPLKAWAERVFSTERTLARLFQRELGMSFGQWRNRARLLEALSGLKQGDSVQAISARLGYATPS
AFIAMFQKHLGDSPERYRRQLLESGGWPDEFSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=243, Percent_Identity=30.4526748971193, Blast_Score=117, Evalue=9e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31249; Mature: 31249

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGSENDYFAGDQGLPEPAPLIFRFHRFTPKSEFARHRHRWGQLSRINLGMMELLLDDRR
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH
VVATAQYLLWTPPAEPHAAYIHQAMHYTSIYVGDEVAARLPLSTCLLEQTPLVRALLDDF
HHHHHHHHEECCCCCHHHHHHHHHHHHHHHEECCHHHHHCCHHHHHHHCCHHHHHHHHHH
GQRQITTPTDPWDIRQAELLCRRILQSGREASYLPDSRQRLLQPILDAIRQDPADTTPLK
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
AWAERVFSTERTLARLFQRELGMSFGQWRNRARLLEALSGLKQGDSVQAISARLGYATPS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHH
AFIAMFQKHLGDSPERYRRQLLESGGWPDEFSA
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDGSENDYFAGDQGLPEPAPLIFRFHRFTPKSEFARHRHRWGQLSRINLGMMELLLDDRR
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH
VVATAQYLLWTPPAEPHAAYIHQAMHYTSIYVGDEVAARLPLSTCLLEQTPLVRALLDDF
HHHHHHHHEECCCCCHHHHHHHHHHHHHHHEECCHHHHHCCHHHHHHHCCHHHHHHHHHH
GQRQITTPTDPWDIRQAELLCRRILQSGREASYLPDSRQRLLQPILDAIRQDPADTTPLK
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
AWAERVFSTERTLARLFQRELGMSFGQWRNRARLLEALSGLKQGDSVQAISARLGYATPS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHH
AFIAMFQKHLGDSPERYRRQLLESGGWPDEFSA
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]