| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498840
Identifier: 34498840
GI number: 34498840
Start: 3679366
End: 3679884
Strand: Reverse
Name: 34498840
Synonym: CV_3385
Alternate gene names: NA
Gene position: 3679884-3679366 (Counterclockwise)
Preceding gene: 34498841
Following gene: 34498839
Centisome position: 77.45
GC content: 65.7
Gene sequence:
>519_bases ATGGGCGACCGCCGGCTGGCGGTTGCCCGTTTTTGTTTTCCGGGAGGTCAGTTGGAAGAATTCGGTCAATGCGAGGCCGG CCTGCCTTTGCCGGCGGCGCAGCGCAAGCAGCGCGCGTCCATCGTCATCATCGAGAACGGCAGGCTGTTGCTGATGCGCA GGGTGAAGCCGGGCAAGGAGTATTATGTTCTGCCTGGCGGCAACATCAAGCGGAACGAGACGCCGGCGATGGCCTGCGTG CGCGAGACGCGAGAGGAGACGGGCTTGAATGTCTGGCTGGAGGAAGGCCCGCTGTGCGTGCTGGAGAGCGAGAGCCGGAC CGAGCATGTGTTCGTCGCGCGCGAGCACCGCGGCATGCTGAGGCTGGGCGGTCCGGAACTGGCCAAGCTGTCGCCGGACA ATCACTACGAGCTGGTCTGGCTGGATGCCGAGGCACTGGCCATGGTCAAGTTGCGGCCCAAGTCGCTGCGCCCGCATTGC CTGGCGCGGCTGGGAGCCGTGGACGGGACTCGGGCATAA
Upstream 100 bases:
>100_bases AGAAGGCCGGCGGCCAGCGCCGCGGATCCCCCCGCAAGCCCAAGGCCGCGCGCAGCGAGTAAGCCGGCCGTTCCGCGAAA GCGGAACCCGCTTCCAAGAC
Downstream 100 bases:
>100_bases TGGCGAAATCCTCATCAGGAATACCGACATGAGCAAGGCGTTTACCAAAGAAGACGAGCAGCAGGACGATGATCTGCCGG CCGAGCGCCGCCTGCCGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: MutT/NUDIX Family Phosphohydrolase
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MGDRRLAVARFCFPGGQLEEFGQCEAGLPLPAAQRKQRASIVIIENGRLLLMRRVKPGKEYYVLPGGNIKRNETPAMACV RETREETGLNVWLEEGPLCVLESESRTEHVFVAREHRGMLRLGGPELAKLSPDNHYELVWLDAEALAMVKLRPKSLRPHC LARLGAVDGTRA
Sequences:
>Translated_172_residues MGDRRLAVARFCFPGGQLEEFGQCEAGLPLPAAQRKQRASIVIIENGRLLLMRRVKPGKEYYVLPGGNIKRNETPAMACV RETREETGLNVWLEEGPLCVLESESRTEHVFVAREHRGMLRLGGPELAKLSPDNHYELVWLDAEALAMVKLRPKSLRPHC LARLGAVDGTRA >Mature_171_residues GDRRLAVARFCFPGGQLEEFGQCEAGLPLPAAQRKQRASIVIIENGRLLLMRRVKPGKEYYVLPGGNIKRNETPAMACVR ETREETGLNVWLEEGPLCVLESESRTEHVFVAREHRGMLRLGGPELAKLSPDNHYELVWLDAEALAMVKLRPKSLRPHCL ARLGAVDGTRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19226; Mature: 19094
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDRRLAVARFCFPGGQLEEFGQCEAGLPLPAAQRKQRASIVIIENGRLLLMRRVKPGKE CCCCEEEEEEEECCCCCCHHHCCCCCCCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCC YYVLPGGNIKRNETPAMACVRETREETGLNVWLEEGPLCVLESESRTEHVFVAREHRGML EEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCEEEEEEECCCCEE RLGGPELAKLSPDNHYELVWLDAEALAMVKLRPKSLRPHCLARLGAVDGTRA EECCCCEEEECCCCCEEEEEECHHHEEEEEECCCCCCHHHHHHHCCCCCCCC >Mature Secondary Structure GDRRLAVARFCFPGGQLEEFGQCEAGLPLPAAQRKQRASIVIIENGRLLLMRRVKPGKE CCCEEEEEEEECCCCCCHHHCCCCCCCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCC YYVLPGGNIKRNETPAMACVRETREETGLNVWLEEGPLCVLESESRTEHVFVAREHRGML EEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCEEEEEEECCCCEE RLGGPELAKLSPDNHYELVWLDAEALAMVKLRPKSLRPHCLARLGAVDGTRA EECCCCEEEECCCCCEEEEEECHHHEEEEEECCCCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA