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The map label for this gene is ygeR [H]

Identifier: 34498817

GI number: 34498817

Start: 3658468

End: 3659145

Strand: Direct

Name: ygeR [H]

Synonym: CV_3362

Alternate gene names: 34498817

Gene position: 3658468-3659145 (Clockwise)

Preceding gene: 34498815

Following gene: 34498818

Centisome position: 77.0

GC content: 69.17

Gene sequence:

>678_bases
CTGCGTACTCTTATTCTTTGTAGCAGCTTATTGCTAGCTGCCTGCGCCACGCCATCCGCGTCGAACGCGCCGGCTCCCGC
CGGCTATTACCGCGTCCAGCCGGGCGACACGCTGTACCGCATCGCGCGCCAGAACAAGCAAAGCGTCGCCAACCTGGCGC
GCTGGAACCAGCTGGCGGACCGCTCAAGCATCCAGGCCGGGCAGCTGCTGCGGATCCAGCCGCCGGCCAGCGCAGCCAGG
CCGCCCTCGGCCGGCAAGCCTTCCGCGTCCAAGCCGGCGGAGACCCGGCCGGCGCCGCCGCCGGCCAAGCTGGACATCAA
GCTGCAATGGCCGGCCGACGGCGCGCTGATATCCGGTTTCGACGGCAACCGCAACAAGGGGCTGGACCTGGCCGGCAAGG
CCGGCGACCCTGTGCGCGCCGCCGCGGCGGGCAAGGTGGTGTACGCCGGCAAGGGCATACGCGCCTACGGCAATCTGCTG
ATCGTCAAGCACAATGAAAACACCTTGACCGTCTACGCCCACAACCAGAAGCTGCTGGTGCAGGAAGGCCAGCAGGTGAG
CGCCGGCCAGCAGATCGCGACCATGGGCGACTCCGGCGCCAACCGGGTCAAGCTGCATTTCGAGCTGCGGCTGGGCACCC
GGGTGGTGGACCCGGCCGCCTACCTGCCGCCGCGCTGA

Upstream 100 bases:

>100_bases
AGCCAAGCCAAAGCCATTTCCTCATCGCGGCGCCCCGTCGATCCGCTCGCCGGGACTGCGGCCCGGCAGGCGGACGATGA
TAGAATCCCAAACCATGTCC

Downstream 100 bases:

>100_bases
GCCAGGGCCAGACTTGCCGGGACGCGCGCGGGCTCGGCTGACGGCGCTTGCGCGCCCAGGCGGCTTGGCCTAACCTCGCC
GCTGTCGCACCGCTCCAGAC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRTLILCSSLLLAACATPSASNAPAPAGYYRVQPGDTLYRIARQNKQSVANLARWNQLADRSSIQAGQLLRIQPPASAAR
PPSAGKPSASKPAETRPAPPPAKLDIKLQWPADGALISGFDGNRNKGLDLAGKAGDPVRAAAAGKVVYAGKGIRAYGNLL
IVKHNENTLTVYAHNQKLLVQEGQQVSAGQQIATMGDSGANRVKLHFELRLGTRVVDPAAYLPPR

Sequences:

>Translated_225_residues
MRTLILCSSLLLAACATPSASNAPAPAGYYRVQPGDTLYRIARQNKQSVANLARWNQLADRSSIQAGQLLRIQPPASAAR
PPSAGKPSASKPAETRPAPPPAKLDIKLQWPADGALISGFDGNRNKGLDLAGKAGDPVRAAAAGKVVYAGKGIRAYGNLL
IVKHNENTLTVYAHNQKLLVQEGQQVSAGQQIATMGDSGANRVKLHFELRLGTRVVDPAAYLPPR
>Mature_225_residues
MRTLILCSSLLLAACATPSASNAPAPAGYYRVQPGDTLYRIARQNKQSVANLARWNQLADRSSIQAGQLLRIQPPASAAR
PPSAGKPSASKPAETRPAPPPAKLDIKLQWPADGALISGFDGNRNKGLDLAGKAGDPVRAAAAGKVVYAGKGIRAYGNLL
IVKHNENTLTVYAHNQKLLVQEGQQVSAGQQIATMGDSGANRVKLHFELRLGTRVVDPAAYLPPR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=233, Percent_Identity=41.2017167381974, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=49.5798319327731, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=34.453781512605, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 23785; Mature: 23785

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLILCSSLLLAACATPSASNAPAPAGYYRVQPGDTLYRIARQNKQSVANLARWNQLAD
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RSSIQAGQLLRIQPPASAARPPSAGKPSASKPAETRPAPPPAKLDIKLQWPADGALISGF
HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECC
DGNRNKGLDLAGKAGDPVRAAAAGKVVYAGKGIRAYGNLLIVKHNENTLTVYAHNQKLLV
CCCCCCCCEEECCCCCCEEHHHCCEEEEECCCEEEECCEEEEEECCCEEEEEECCCEEEE
QEGQQVSAGQQIATMGDSGANRVKLHFELRLGTRVVDPAAYLPPR
ECCCCCCCCCEEEECCCCCCCEEEEEEEEEECCEEECCCCCCCCC
>Mature Secondary Structure
MRTLILCSSLLLAACATPSASNAPAPAGYYRVQPGDTLYRIARQNKQSVANLARWNQLAD
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RSSIQAGQLLRIQPPASAARPPSAGKPSASKPAETRPAPPPAKLDIKLQWPADGALISGF
HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECC
DGNRNKGLDLAGKAGDPVRAAAAGKVVYAGKGIRAYGNLLIVKHNENTLTVYAHNQKLLV
CCCCCCCCEEECCCCCCEEHHHCCEEEEECCCEEEECCEEEEEECCCEEEEEECCCEEEE
QEGQQVSAGQQIATMGDSGANRVKLHFELRLGTRVVDPAAYLPPR
ECCCCCCCCCEEEECCCCCCCEEEEEEEEEECCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]