Click here to switch to the map view.

The map label for this gene is ycaR [C]

Identifier: 34498800

GI number: 34498800

Start: 3642952

End: 3643134

Strand: Reverse

Name: ycaR [C]

Synonym: CV_3345

Alternate gene names: 34498800

Gene position: 3643134-3642952 (Counterclockwise)

Preceding gene: 34498801

Following gene: 34498799

Centisome position: 76.68

GC content: 59.02

Gene sequence:

>183_bases
ATGGACGCTAAATTTCTGGAAATCCTGGTGTGCCCGCTGTGCAAGGGCCCGCTGGTGTTCGACAAGAGCAAGGACGAGCT
GATCTGCAAGGGAGACCGCCTGGCGTTCCCGATCAAGGACGGCATCCCGATGATGCTGGAGAGCGAAGCGCGCGAGCTGG
CCCCGGAAGAAGAAGTCAAATGA

Upstream 100 bases:

>100_bases
CATGATGCGGCGCAGCGTGCTAGACTATGGGTTTTGCCGGTTCAGGCCACGCTGGCGCCTGATCTGTGCGAATGGATACT
AGCCCGCTTGAAGACGAAAC

Downstream 100 bases:

>100_bases
ACGGCTTCACGGTGGTGATCCCGGCGCGGATGGCGTCCAGCCGTCTGCCTGGCAAGCCGCTGGCAGACATCGCCGGCAAG
CCCATGGTGGTGCGCGTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 60; Mature: 60

Protein sequence:

>60_residues
MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVK

Sequences:

>Translated_60_residues
MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVK
>Mature_60_residues
MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVK

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=57, Percent_Identity=56.140350877193, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3345_CHRVO (Q7NSS5)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903015.1
- PDB:   2HF1
- PDBsum:   2HF1
- ProteinModelPortal:   Q7NSS5
- SMR:   Q7NSS5
- GeneID:   2547423
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3345
- NMPDR:   fig|243365.1.peg.3345
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- PhylomeDB:   Q7NSS5
- ProtClustDB:   CLSK2485596
- BioCyc:   CVIO243365:CV_3345-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 6751; Mature: 6751

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
10.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVK
CCCHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEECCCCCCCEECCCHHHCCCCCCCC
>Mature Secondary Structure
MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVK
CCCHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEECCCCCCCEECCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782