| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498762
Identifier: 34498762
GI number: 34498762
Start: 3601238
End: 3601915
Strand: Reverse
Name: 34498762
Synonym: CV_3307
Alternate gene names: NA
Gene position: 3601915-3601238 (Counterclockwise)
Preceding gene: 34498765
Following gene: 34498758
Centisome position: 75.81
GC content: 66.37
Gene sequence:
>678_bases ATGACGAGCATGATTCGCCGTTTCATCCTGGTACGCATGATATTGGCCCGCCCCAGGCTGGCATGGTCGGCGCTGTTCGG CCTATTGGTGATCGCGGTTTTGCCCCATGTCGCGGCGATGCACGATGTCACGCGCTACATCGTCGGCTGGAACGCCGGCG CCTGGCTGTATCTGGCGCTGGCCGGCTGGATGATGTTCGGGGCGGGGCGCAAGCCGATACGGCATTGGGCCCGGGTGGAG GACGAGGGGCAATGGCTGGTGCTGCTGCTGGTGTGCGTGGCGGCGGCGGCCAGCCTGTCGGCCATCGTGATGGAGCTGGC GGTGGTGAAAGACATGCATGGCTGGCCGCGCGCCGCCCATATCGCGCTGGCGGTGCTGACCTTGCTGTCCTCGTGGGCGT TCACCCATGTGATGTTCGCGCTGCATTACGCGCGCGGCTTCTACGCGAGGGAAGCGCACGGCCTGCCGGGCGGGCTGGAG TTCCCGGGCACCCGGCAGCCGGATTACGAGGACTTCCTGTATTTCGCCTTCATCATCGGCACCTCGGGCCAGACCGCCGA CGTCAGCTTCACCGACGGCAGCCAGCGCCGCACCGGCACCGTGCACTGCGTGCTGGCCTTCTTCTTCAACGCCACCGTGC TGGCGCTGATGATCAACATCGCCGCCGGGCTGATCTGA
Upstream 100 bases:
>100_bases AGAAATATTTTATGCAATTTGAATTTAGCGTGAGGCCATGCCCGCCCGATAGTCCGGGCGCGGCGCGTCGCGCGCATTCG ACACTGGAGGATATCCATTG
Downstream 100 bases:
>100_bases TCCGCCTGCAATGCGAAACGCCACCGCGTGCGGTGGCGTTTTTGCGTCCGGCGGGCGCTCAGGCCGCGGGCGGTTCGGTA TCCTGGAAGGACGGCCGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 225; Mature: 224
Protein sequence:
>225_residues MTSMIRRFILVRMILARPRLAWSALFGLLVIAVLPHVAAMHDVTRYIVGWNAGAWLYLALAGWMMFGAGRKPIRHWARVE DEGQWLVLLLVCVAAAASLSAIVMELAVVKDMHGWPRAAHIALAVLTLLSSWAFTHVMFALHYARGFYAREAHGLPGGLE FPGTRQPDYEDFLYFAFIIGTSGQTADVSFTDGSQRRTGTVHCVLAFFFNATVLALMINIAAGLI
Sequences:
>Translated_225_residues MTSMIRRFILVRMILARPRLAWSALFGLLVIAVLPHVAAMHDVTRYIVGWNAGAWLYLALAGWMMFGAGRKPIRHWARVE DEGQWLVLLLVCVAAAASLSAIVMELAVVKDMHGWPRAAHIALAVLTLLSSWAFTHVMFALHYARGFYAREAHGLPGGLE FPGTRQPDYEDFLYFAFIIGTSGQTADVSFTDGSQRRTGTVHCVLAFFFNATVLALMINIAAGLI >Mature_224_residues TSMIRRFILVRMILARPRLAWSALFGLLVIAVLPHVAAMHDVTRYIVGWNAGAWLYLALAGWMMFGAGRKPIRHWARVED EGQWLVLLLVCVAAAASLSAIVMELAVVKDMHGWPRAAHIALAVLTLLSSWAFTHVMFALHYARGFYAREAHGLPGGLEF PGTRQPDYEDFLYFAFIIGTSGQTADVSFTDGSQRRTGTVHCVLAFFFNATVLALMINIAAGLI
Specific function: Unknown
COG id: COG4291
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24877; Mature: 24745
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSMIRRFILVRMILARPRLAWSALFGLLVIAVLPHVAAMHDVTRYIVGWNAGAWLYLAL CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AGWMMFGAGRKPIRHWARVEDEGQWLVLLLVCVAAAASLSAIVMELAVVKDMHGWPRAAH HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH IALAVLTLLSSWAFTHVMFALHYARGFYAREAHGLPGGLEFPGTRQPDYEDFLYFAFIIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC TSGQTADVSFTDGSQRRTGTVHCVLAFFFNATVLALMINIAAGLI CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TSMIRRFILVRMILARPRLAWSALFGLLVIAVLPHVAAMHDVTRYIVGWNAGAWLYLAL HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AGWMMFGAGRKPIRHWARVEDEGQWLVLLLVCVAAAASLSAIVMELAVVKDMHGWPRAAH HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH IALAVLTLLSSWAFTHVMFALHYARGFYAREAHGLPGGLEFPGTRQPDYEDFLYFAFIIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC TSGQTADVSFTDGSQRRTGTVHCVLAFFFNATVLALMINIAAGLI CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA