| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yfeH [C]
Identifier: 34498600
GI number: 34498600
Start: 3427631
End: 3428602
Strand: Direct
Name: yfeH [C]
Synonym: CV_3145
Alternate gene names: 34498600
Gene position: 3427631-3428602 (Clockwise)
Preceding gene: 34498598
Following gene: 34498604
Centisome position: 72.14
GC content: 68.0
Gene sequence:
>972_bases ATGCCCAAACTGTTGGATTCCTTCACCGCCGCGCTGCTGGCCACCGTGGCCCTGGCCAGCCTGCTGCCCTGTTACGGCCC AGCCGCGCAGATCTTCAACCTGGCCACCAATCTGGCCATCGGCCTGCTGTTCTTCCTGCACGGCGCCAAGCTGTCGCGCG AGGCCGTGATCGCCGGCGCCGGCCACTGGAGGCTGCACCTGACCGTGCTGGCCTGCACCTTCGCGCTGTTCCCGCTGCTG GGCCTGCTGCTCAAACCGGCGCTGACGCCGCTGGTGACGCCGGAGCTGTACTTGGGCGTGCTCTATCTGTGCATGCTGCC GTCCACCGTGCAGTCATCCATCGCCTTCACCTCCATGGCCCAGGGCAATGTGCCGGCCGCCATCTGCAGCGCCACCGCGT CGAACTTGCTGGGCATCTTCATCACGCCGCTGCTGACGGGTTGGCTGGTGGCCGGCCACGCCGGCGGGGCGCAGAACATG GGGTCGGCGCTGGACATCGTCTACCAGCTGCTGTTGCCCTTCATCGCCGGCCAGATCGCCCGCCGCTGGATAGGCGGCTG GGTGGACAAGCACAAGGCCCTGCTGAAATACGTGGACCAGGGCTCGATCCTGATGGTGGTGTACACCGCGTTCAGCGCGG CGGTGATCAGCGGGCTGTGGCGGCAGACGCCGCCGTCGGCGCTGGCCGGCCTGCTGGCGGTCAACGCCATCCTGTTGGGC CTGCTGCTGGCGATCACCTCGCTGGCCGGCCGCAAGCTGGGCTTCAGCCGCGAGGACAGGATCACCATCCTGTTTTGCGG CTCGAAGAAGAGCCTGGCCAGCGGCGTGCCGATGGCCAAGGTGCTGTTCGCCGGCCACGCCATCGGCGCCATCGTGCTGC CCTTGATGCTGTTCCACCAGATCCAGCTGATGGTGTGCGCGATGCTGGCCCAGCGCTTCCGCCAGCGCCAGCTGGCCGAA GCCCGCGCCTGA
Upstream 100 bases:
>100_bases AATTCATAAAAATAAGTTATTAATTGATCAGATAAATACATTTGTATTCTGAATTGATCCGCGCTTCAATAGCGGCATCG AACAACGAACGCCCGATGCC
Downstream 100 bases:
>100_bases AAGAAAAATCCCCGCCGAAGCGGGGATGGTTCACCGGCAAGCCCTCAGGCCTGCCGCGCCAGCGAGGTGATGACCGGCAG CGACTCCTTGCCGTAGCACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MPKLLDSFTAALLATVALASLLPCYGPAAQIFNLATNLAIGLLFFLHGAKLSREAVIAGAGHWRLHLTVLACTFALFPLL GLLLKPALTPLVTPELYLGVLYLCMLPSTVQSSIAFTSMAQGNVPAAICSATASNLLGIFITPLLTGWLVAGHAGGAQNM GSALDIVYQLLLPFIAGQIARRWIGGWVDKHKALLKYVDQGSILMVVYTAFSAAVISGLWRQTPPSALAGLLAVNAILLG LLLAITSLAGRKLGFSREDRITILFCGSKKSLASGVPMAKVLFAGHAIGAIVLPLMLFHQIQLMVCAMLAQRFRQRQLAE ARA
Sequences:
>Translated_323_residues MPKLLDSFTAALLATVALASLLPCYGPAAQIFNLATNLAIGLLFFLHGAKLSREAVIAGAGHWRLHLTVLACTFALFPLL GLLLKPALTPLVTPELYLGVLYLCMLPSTVQSSIAFTSMAQGNVPAAICSATASNLLGIFITPLLTGWLVAGHAGGAQNM GSALDIVYQLLLPFIAGQIARRWIGGWVDKHKALLKYVDQGSILMVVYTAFSAAVISGLWRQTPPSALAGLLAVNAILLG LLLAITSLAGRKLGFSREDRITILFCGSKKSLASGVPMAKVLFAGHAIGAIVLPLMLFHQIQLMVCAMLAQRFRQRQLAE ARA >Mature_322_residues PKLLDSFTAALLATVALASLLPCYGPAAQIFNLATNLAIGLLFFLHGAKLSREAVIAGAGHWRLHLTVLACTFALFPLLG LLLKPALTPLVTPELYLGVLYLCMLPSTVQSSIAFTSMAQGNVPAAICSATASNLLGIFITPLLTGWLVAGHAGGAQNMG SALDIVYQLLLPFIAGQIARRWIGGWVDKHKALLKYVDQGSILMVVYTAFSAAVISGLWRQTPPSALAGLLAVNAILLGL LLAITSLAGRKLGFSREDRITILFCGSKKSLASGVPMAKVLFAGHAIGAIVLPLMLFHQIQLMVCAMLAQRFRQRQLAEA RA
Specific function: Unknown
COG id: COG0385
COG function: function code R; Predicted Na+-dependent transporter
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfeH [H]
Homologues:
Organism=Homo sapiens, GI71725371, Length=331, Percent_Identity=27.7945619335347, Blast_Score=107, Evalue=1e-23, Organism=Escherichia coli, GI1788749, Length=321, Percent_Identity=52.9595015576324, Blast_Score=314, Evalue=4e-87, Organism=Saccharomyces cerevisiae, GI6323677, Length=338, Percent_Identity=22.4852071005917, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002657 - InterPro: IPR016833 [H]
Pfam domain/function: PF01758 SBF [H]
EC number: NA
Molecular weight: Translated: 34225; Mature: 34093
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLLDSFTAALLATVALASLLPCYGPAAQIFNLATNLAIGLLFFLHGAKLSREAVIAGA CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECC GHWRLHLTVLACTFALFPLLGLLLKPALTPLVTPELYLGVLYLCMLPSTVQSSIAFTSMA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH QGNVPAAICSATASNLLGIFITPLLTGWLVAGHAGGAQNMGSALDIVYQLLLPFIAGQIA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RRWIGGWVDKHKALLKYVDQGSILMVVYTAFSAAVISGLWRQTPPSALAGLLAVNAILLG HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LLLAITSLAGRKLGFSREDRITILFCGSKKSLASGVPMAKVLFAGHAIGAIVLPLMLFHQ HHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH IQLMVCAMLAQRFRQRQLAEARA HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PKLLDSFTAALLATVALASLLPCYGPAAQIFNLATNLAIGLLFFLHGAKLSREAVIAGA CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECC GHWRLHLTVLACTFALFPLLGLLLKPALTPLVTPELYLGVLYLCMLPSTVQSSIAFTSMA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH QGNVPAAICSATASNLLGIFITPLLTGWLVAGHAGGAQNMGSALDIVYQLLLPFIAGQIA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RRWIGGWVDKHKALLKYVDQGSILMVVYTAFSAAVISGLWRQTPPSALAGLLAVNAILLG HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LLLAITSLAGRKLGFSREDRITILFCGSKKSLASGVPMAKVLFAGHAIGAIVLPLMLFHQ HHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH IQLMVCAMLAQRFRQRQLAEARA HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 1849605 [H]