| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498569
Identifier: 34498569
GI number: 34498569
Start: 3400698
End: 3401195
Strand: Direct
Name: 34498569
Synonym: CV_3114
Alternate gene names: NA
Gene position: 3400698-3401195 (Clockwise)
Preceding gene: 34498568
Following gene: 34498570
Centisome position: 71.58
GC content: 66.06
Gene sequence:
>498_bases CTGATCGCGGCGCTGATGATGCTGATCGTGATCACCATCATCGGCATCGCGCTGATGCGCAGCAGCGGCCTCCTGGGCAA GCTGGCCGGCAACACCCGCGAAAAGGGCCGCGCCTTCGAGGCCGCGGAAGCGACGCTGCAATACGCGGAGTGGTGGCTGA ACCAAGGCGGCAACGCCGGCGCCGCCGCCAATTGCAGCGGCAGGCAAAGCACGCTGCAGGTCTGCAACAACGCGCTGTCC AACCCGACCGCCACAACATCGTGGGGCAACGCCGGCTATACCTACACCCCGCCCTTCATGACCGCCTCTGCCAGCGGCGG CGGCCAAACCTATTACCAGTCCCCCCAGCTCTACATCCAGTATCTGGGCCTGAACGCCGCCGGCAGCGGCGCGATCTACC AGCTCACCGCGATAGGCTACGGCGGCAACGCCGCGTCGGTGGCCGTGCTGCAAAGCACCTACACGCTGTACTCCGGCACC ACCAACCTGGGGAAATGA
Upstream 100 bases:
>100_bases AGCAGTCCACGGTGACCATGTCCTGGCTCACCGGCCTGATGAACCAGCTATGAAGCGCCATCTCCATCGATCCCGCTGTT GCCGTCCACGCGGCTTCACG
Downstream 100 bases:
>100_bases CCATGCGACCCGATGCCCCGCGCCTCACCCTCAGCCTGACGGCGCTGTTGGCCGCAAGCCTGTGGCCGCAAGCCGCCGGC GCGGTCACCGTCAGCGACAA
Product: type-4 fimbrial biogenesis transmembrane protein
Products: NA
Alternate protein names: Transmembrane Tfp Pilus Assembly Protein PilX; Tfp Pilus Assembly Protein
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MIAALMMLIVITIIGIALMRSSGLLGKLAGNTREKGRAFEAAEATLQYAEWWLNQGGNAGAAANCSGRQSTLQVCNNALS NPTATTSWGNAGYTYTPPFMTASASGGGQTYYQSPQLYIQYLGLNAAGSGAIYQLTAIGYGGNAASVAVLQSTYTLYSGT TNLGK
Sequences:
>Translated_165_residues MIAALMMLIVITIIGIALMRSSGLLGKLAGNTREKGRAFEAAEATLQYAEWWLNQGGNAGAAANCSGRQSTLQVCNNALS NPTATTSWGNAGYTYTPPFMTASASGGGQTYYQSPQLYIQYLGLNAAGSGAIYQLTAIGYGGNAASVAVLQSTYTLYSGT TNLGK >Mature_165_residues MIAALMMLIVITIIGIALMRSSGLLGKLAGNTREKGRAFEAAEATLQYAEWWLNQGGNAGAAANCSGRQSTLQVCNNALS NPTATTSWGNAGYTYTPPFMTASASGGGQTYYQSPQLYIQYLGLNAAGSGAIYQLTAIGYGGNAASVAVLQSTYTLYSGT TNLGK
Specific function: Unknown
COG id: COG4726
COG function: function code NU; Tfp pilus assembly protein PilX
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17100; Mature: 17100
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAALMMLIVITIIGIALMRSSGLLGKLAGNTREKGRAFEAAEATLQYAEWWLNQGGNAG CHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCC AAANCSGRQSTLQVCNNALSNPTATTSWGNAGYTYTPPFMTASASGGGQTYYQSPQLYIQ CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEECCCCCCCCEEECCEEEEE YLGLNAAGSGAIYQLTAIGYGGNAASVAVLQSTYTLYSGTTNLGK EECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHEECCCCCCCC >Mature Secondary Structure MIAALMMLIVITIIGIALMRSSGLLGKLAGNTREKGRAFEAAEATLQYAEWWLNQGGNAG CHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCC AAANCSGRQSTLQVCNNALSNPTATTSWGNAGYTYTPPFMTASASGGGQTYYQSPQLYIQ CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEECCCCCCCCEEECCEEEEE YLGLNAAGSGAIYQLTAIGYGGNAASVAVLQSTYTLYSGTTNLGK EECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA