Click here to switch to the map view.

The map label for this gene is ppdD [C]

Identifier: 34498566

GI number: 34498566

Start: 3398889

End: 3399446

Strand: Direct

Name: ppdD [C]

Synonym: CV_3111

Alternate gene names: 34498566

Gene position: 3398889-3399446 (Clockwise)

Preceding gene: 34498565

Following gene: 34498567

Centisome position: 71.54

GC content: 64.52

Gene sequence:

>558_bases
ATGGACAAGAAACAAGGTTTCACCCTGCTGGAGCTGTTGATCGTCATGGCCTTGCTGGCCATCGTCCTGGCATTCGCCGT
GCCGGCCTATCAAAGCACCGTGTCCAGCAACGCGGTGATGTCCGAGAGCAACAATCTGTACGGCGACATCCTGTCCGCGC
GCAACGAGGCGCTCAAACGCGGCCAGGTCGTGCTGGTCTGTCCTTCCTCCGACGGCGCCAACTGCAATACCGTCGCGCCG
GCCAGCACGAATTGGGCTGGAGGCTGGATCGTGCTGCAAGCGGTCAACAACAGCTGCGGCGACACCAGCGGCACCGTGCT
GCGCAGGCAGCAGGCCTTCGGCAGCGGCGACAGCGCCGTCTACAGCAACAGCGCCTATCCGTCGCTATGCTTCAACCGCA
TGGGCTACGCCCCGTCCAGCAACGTCGGCATGCTTACCTTCAACACGCCCGCCAACCAGGCCAGCAGCCGACGCTGCGTG
GCGCTGGCGGCGGTCGGCCACCCCCAGGTGCTGGCCAGCGGCCAGACCGACAGCACGGGACAATACACATGTCCATGA

Upstream 100 bases:

>100_bases
GGACCAGCGGCGGCGGCGGCGATTCCGCCGCGGGGAGTCTTGGCTGATAATGGATTGAAGCACTTCGCCGGCGCGCGCGC
CGGGCAACAGATTGAGCATC

Downstream 100 bases:

>100_bases
GCGCGCCCCGCCAGAGCGGCTTCAGCATGCTGGAAGTGCTGGTGGCGCTGATCGTGATCTCGCTGGGCCTGCTCGGCATC
GCCGGCATGCAGGCCGCCGC

Product: type-4 fimbrial pilin related signal peptide protein

Products: NA

Alternate protein names: Type IV Fimbrial Fimt-Related Pilin; Type-4 Fimbrial Pilin Related Protein

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MDKKQGFTLLELLIVMALLAIVLAFAVPAYQSTVSSNAVMSESNNLYGDILSARNEALKRGQVVLVCPSSDGANCNTVAP
ASTNWAGGWIVLQAVNNSCGDTSGTVLRRQQAFGSGDSAVYSNSAYPSLCFNRMGYAPSSNVGMLTFNTPANQASSRRCV
ALAAVGHPQVLASGQTDSTGQYTCP

Sequences:

>Translated_185_residues
MDKKQGFTLLELLIVMALLAIVLAFAVPAYQSTVSSNAVMSESNNLYGDILSARNEALKRGQVVLVCPSSDGANCNTVAP
ASTNWAGGWIVLQAVNNSCGDTSGTVLRRQQAFGSGDSAVYSNSAYPSLCFNRMGYAPSSNVGMLTFNTPANQASSRRCV
ALAAVGHPQVLASGQTDSTGQYTCP
>Mature_185_residues
MDKKQGFTLLELLIVMALLAIVLAFAVPAYQSTVSSNAVMSESNNLYGDILSARNEALKRGQVVLVCPSSDGANCNTVAP
ASTNWAGGWIVLQAVNNSCGDTSGTVLRRQQAFGSGDSAVYSNSAYPSLCFNRMGYAPSSNVGMLTFNTPANQASSRRCV
ALAAVGHPQVLASGQTDSTGQYTCP

Specific function: Not Yet Known. [C]

COG id: COG4970

COG function: function code NU; Tfp pilus assembly protein FimT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19309; Mature: 19309

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKQGFTLLELLIVMALLAIVLAFAVPAYQSTVSSNAVMSESNNLYGDILSARNEALKR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHC
GQVVLVCPSSDGANCNTVAPASTNWAGGWIVLQAVNNSCGDTSGTVLRRQQAFGSGDSAV
CCEEEEEECCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEE
YSNSAYPSLCFNRMGYAPSSNVGMLTFNTPANQASSRRCVALAAVGHPQVLASGQTDSTG
ECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCCC
QYTCP
CEECC
>Mature Secondary Structure
MDKKQGFTLLELLIVMALLAIVLAFAVPAYQSTVSSNAVMSESNNLYGDILSARNEALKR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHC
GQVVLVCPSSDGANCNTVAPASTNWAGGWIVLQAVNNSCGDTSGTVLRRQQAFGSGDSAV
CCEEEEEECCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEE
YSNSAYPSLCFNRMGYAPSSNVGMLTFNTPANQASSRRCVALAAVGHPQVLASGQTDSTG
ECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCCC
QYTCP
CEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA