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The map label for this gene is ybeD [C]

Identifier: 34498550

GI number: 34498550

Start: 3380743

End: 3381012

Strand: Direct

Name: ybeD [C]

Synonym: CV_3095

Alternate gene names: 34498550

Gene position: 3380743-3381012 (Clockwise)

Preceding gene: 34498549

Following gene: 34498551

Centisome position: 71.16

GC content: 60.0

Gene sequence:

>270_bases
ATGTCCGACGAAAAGCAGGAACTGTTTGAATTCCCCTGTCGCTTCCCGCTCAAGATCATGGGCGAGCGGCACGATGAATT
CGTCACCACCATCACCGAAGTGGTCCGCGTCCACGCGCCCGATCTCGCCGAGATCGACGTGGTGCTGCGCGAAAGCTCCG
GCGGCCGCTTCTATGCGCTGACCGTCACCGTCACCGCCACCTCGCGCCAGCAGCTGGACAACATCTATCTGTCGCTGACC
GGCCATCCGATGGTAAAAATGGTCCTCTAA

Upstream 100 bases:

>100_bases
GGTGGAAGTAAGCCGGGGTATAATAGTATTTGTCAGTAGTACGCAGCGCCGCGGCCAGACCGCGGCCTGCCATTTTGTAA
TCGCGTTAGAGTAGCCAGAC

Downstream 100 bases:

>100_bases
AACACCGGGAGTTCAGGTGCCTCGCATCATCAAACATCTGGGCCGGGTCGATTACGAACCGACCTGGCGCGCCATGCAAG
CCTTCACCGACAGCCGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSDEKQELFEFPCRFPLKIMGERHDEFVTTITEVVRVHAPDLAEIDVVLRESSGGRFYALTVTVTATSRQQLDNIYLSLT
GHPMVKMVL

Sequences:

>Translated_89_residues
MSDEKQELFEFPCRFPLKIMGERHDEFVTTITEVVRVHAPDLAEIDVVLRESSGGRFYALTVTVTATSRQQLDNIYLSLT
GHPMVKMVL
>Mature_88_residues
SDEKQELFEFPCRFPLKIMGERHDEFVTTITEVVRVHAPDLAEIDVVLRESSGGRFYALTVTVTATSRQQLDNIYLSLTG
HPMVKMVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

Organism=Escherichia coli, GI1786850, Length=89, Percent_Identity=34.8314606741573, Blast_Score=59, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3095_CHRVO (Q7NTG1)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_902765.1
- ProteinModelPortal:   Q7NTG1
- GeneID:   2548562
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3095
- NMPDR:   fig|243365.1.peg.3095
- HOGENOM:   HBG297220
- OMA:   TATHIEQ
- PhylomeDB:   Q7NTG1
- ProtClustDB:   CLSK2485563
- BioCyc:   CVIO243365:CV_3095-MONOMER
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 10156; Mature: 10025

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEKQELFEFPCRFPLKIMGERHDEFVTTITEVVRVHAPDLAEIDVVLRESSGGRFYAL
CCCCHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEE
TVTVTATSRQQLDNIYLSLTGHPMVKMVL
EEEEEECCHHCCCEEEEEECCCCEEEEEC
>Mature Secondary Structure 
SDEKQELFEFPCRFPLKIMGERHDEFVTTITEVVRVHAPDLAEIDVVLRESSGGRFYAL
CCCHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEE
TVTVTATSRQQLDNIYLSLTGHPMVKMVL
EEEEEECCHHCCCEEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782