| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498510
Identifier: 34498510
GI number: 34498510
Start: 3334613
End: 3336490
Strand: Direct
Name: 34498510
Synonym: CV_3055
Alternate gene names: NA
Gene position: 3334613-3336490 (Clockwise)
Preceding gene: 34498509
Following gene: 34498511
Centisome position: 70.19
GC content: 64.64
Gene sequence:
>1878_bases ATGTCCATTACCCGACGAGACTTTCTCAACGGTTTTGCGCTGACGGTGGCTGCCGGGCTCACTCCGCTGGAAATTCTCCG TGCCGCACCCCGACAGATCAGCGCCAGCTACTACCCGCCTTCGCTCACAGGCCTGCGCGGCAACCATGACGGCTCGTTCG AGAACGCGCACAAGCTGGGCCGCGCCCACCATGCCGTCAACCTGGGCGGCGCCAAAGTCGAAGAACATTACGACCTGGTG GTGGTCGGCGGCGGCATCAGCGGCCTTGCGGCCGCCCACTACTACCGCAAGAAGCACCCGCAGGCCAAGGTGCTGATCCT GGACAACCACGACGACTTCGGCGGCCACGCCAAGCGCAACGAGTTCAAGGTCGGCAACCGCCTGATGCTGGGCTACGGCG GCACCGAATCGCTGCAATCGCCCAAGCACGTGTTCAGCAAGGAAGCGCTGGCGCTGATGAAGGAACTGACCATCGACATC GATGGACTGGCCAGCCACTTCCACCGCAATTTCTACCCCGACCTCAAGCTGTCGCGCGGCGTGTTCTTCAACAAAGAAGA CTTCGGCGTGGACAAGACCGTCGGCGGCGACCCCTATCTGCAGGTGGCGGACGACATCGACCCCAAGCGCCTGAACGCGC GCCCGATCCGCGACTTCATCAACGACTTCCCGATGTCCAAGAAAGACCGCGACGCGCTGATCGCCCTGCACACCAGCACC CGCGACTACCTGGGCGACATGCCCAAGAACAAGCGCGAGGCTTACCTCGCCAAGATCAGCTACAGCACCTATTTGTCCCG CCACGTCGGCCTGAGCGCCACCGCGATCCGCTTCTTCCAGTCGCGCAGCAACGACTTCCAGGCCGTGGGCATCGACGGCC TGCCGGCGCTGGACGCGCGCAACCTGGACCTGCCGGGCTTCCACGGCGTGGCCGGCCTGGGCAAGATCAGCGCCGAGGCG GAAGCCGAGCTGCGCGACCCCTACATCTACCACTTCCCGGACGGCAACGCCTCCATCGCCCGCCTCCTGGTGCGCAAGAT GATCCCGCAGGCGGCGCCGGGAAAGGACATGAACGACATCGTGCTGGCCCGCTTCGACTACAGCAAGCTGGACCTGCCCG AAAACCCGGTGCGGCTGCGGCTGAACAGCACCGTGGTGCGCGTGGAGAACGCCAAGGGCCCGGTGGACGTCGGCTACCTG GACAAGGGCGGCAGGCTGCGCCGCGTGCAGGGCCGCCACGTAGTGATGGCCTGTTACAACATGATGATCCCGCACATCAT GCCGGAGCTGGAAAACGATCAGAAGCAGGCGCTGGCGATGAACGTCAAGGCGCCGCTGGTCTACACCAAGGTGGTGCTGA AGCACTGGGACAGCTTCATGAAGCTGGGCGTGCACGAGCTGTACTGCCCGTCCATGCCGTACAGCCGCATCAAGATGGAT TATCCGGTGGACCTGGGCGGCTACCAGCACCCGCGCAAGCCGTCCGAGCCGATGTGCCTGCACATGGTCTACGTGCCCAC CATCGCCGGCTCCAACCTCGACCCGCGCACGCAGTGGAAGATGGGCCGCGCCAAACTGCTGGCCATGCCGTTCTCCGAAC ACGAGAACATGATCCGCAGCCAGCTGCAGCGCATCCTGGGCCCCGTAGGCTTCGACCACAACCGCGACATCGCGGCCATC ACCGTCAACCGCTGGTCGCACGGCTATTCCTACTTCCTCAACTCGATGTACGACGACGAAGAAGAGTCCAAGCGCATCAT CGCCGCCGCCCGCCGTCCGGCCGGCAAGGTGGCGATCGCCAACTCCGACTCCGACTGGAACCCGTACACCCACGCCGCCA TCGACCAGGCATGGCGCGCCGTCAACGAGCTGAGCTGA
Upstream 100 bases:
>100_bases TCCCGCATAAAAATTAACAATTTTTACAATTTGTTATAATGGAACGCCAGACAGCACGCAGAGGCTGCTGGTTTATTCCA ATGACAACACAGGAAAAGCC
Downstream 100 bases:
>100_bases CAGGAACACCGTGATGAAACTGATGAAAACCCTGGGCCTCGCGGCCCTGCTGGCCTGCGCGGCGAACGCCGCCCAGGCGC ATGTCGACACCGAGGGCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: FAD Dependent Oxidoreductase; Tat Pathway Signal Sequence Domain Protein; Three-Component Membrane-Bound Alcohol Deshydrogenase
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MSITRRDFLNGFALTVAAGLTPLEILRAAPRQISASYYPPSLTGLRGNHDGSFENAHKLGRAHHAVNLGGAKVEEHYDLV VVGGGISGLAAAHYYRKKHPQAKVLILDNHDDFGGHAKRNEFKVGNRLMLGYGGTESLQSPKHVFSKEALALMKELTIDI DGLASHFHRNFYPDLKLSRGVFFNKEDFGVDKTVGGDPYLQVADDIDPKRLNARPIRDFINDFPMSKKDRDALIALHTST RDYLGDMPKNKREAYLAKISYSTYLSRHVGLSATAIRFFQSRSNDFQAVGIDGLPALDARNLDLPGFHGVAGLGKISAEA EAELRDPYIYHFPDGNASIARLLVRKMIPQAAPGKDMNDIVLARFDYSKLDLPENPVRLRLNSTVVRVENAKGPVDVGYL DKGGRLRRVQGRHVVMACYNMMIPHIMPELENDQKQALAMNVKAPLVYTKVVLKHWDSFMKLGVHELYCPSMPYSRIKMD YPVDLGGYQHPRKPSEPMCLHMVYVPTIAGSNLDPRTQWKMGRAKLLAMPFSEHENMIRSQLQRILGPVGFDHNRDIAAI TVNRWSHGYSYFLNSMYDDEEESKRIIAAARRPAGKVAIANSDSDWNPYTHAAIDQAWRAVNELS
Sequences:
>Translated_625_residues MSITRRDFLNGFALTVAAGLTPLEILRAAPRQISASYYPPSLTGLRGNHDGSFENAHKLGRAHHAVNLGGAKVEEHYDLV VVGGGISGLAAAHYYRKKHPQAKVLILDNHDDFGGHAKRNEFKVGNRLMLGYGGTESLQSPKHVFSKEALALMKELTIDI DGLASHFHRNFYPDLKLSRGVFFNKEDFGVDKTVGGDPYLQVADDIDPKRLNARPIRDFINDFPMSKKDRDALIALHTST RDYLGDMPKNKREAYLAKISYSTYLSRHVGLSATAIRFFQSRSNDFQAVGIDGLPALDARNLDLPGFHGVAGLGKISAEA EAELRDPYIYHFPDGNASIARLLVRKMIPQAAPGKDMNDIVLARFDYSKLDLPENPVRLRLNSTVVRVENAKGPVDVGYL DKGGRLRRVQGRHVVMACYNMMIPHIMPELENDQKQALAMNVKAPLVYTKVVLKHWDSFMKLGVHELYCPSMPYSRIKMD YPVDLGGYQHPRKPSEPMCLHMVYVPTIAGSNLDPRTQWKMGRAKLLAMPFSEHENMIRSQLQRILGPVGFDHNRDIAAI TVNRWSHGYSYFLNSMYDDEEESKRIIAAARRPAGKVAIANSDSDWNPYTHAAIDQAWRAVNELS >Mature_624_residues SITRRDFLNGFALTVAAGLTPLEILRAAPRQISASYYPPSLTGLRGNHDGSFENAHKLGRAHHAVNLGGAKVEEHYDLVV VGGGISGLAAAHYYRKKHPQAKVLILDNHDDFGGHAKRNEFKVGNRLMLGYGGTESLQSPKHVFSKEALALMKELTIDID GLASHFHRNFYPDLKLSRGVFFNKEDFGVDKTVGGDPYLQVADDIDPKRLNARPIRDFINDFPMSKKDRDALIALHTSTR DYLGDMPKNKREAYLAKISYSTYLSRHVGLSATAIRFFQSRSNDFQAVGIDGLPALDARNLDLPGFHGVAGLGKISAEAE AELRDPYIYHFPDGNASIARLLVRKMIPQAAPGKDMNDIVLARFDYSKLDLPENPVRLRLNSTVVRVENAKGPVDVGYLD KGGRLRRVQGRHVVMACYNMMIPHIMPELENDQKQALAMNVKAPLVYTKVVLKHWDSFMKLGVHELYCPSMPYSRIKMDY PVDLGGYQHPRKPSEPMCLHMVYVPTIAGSNLDPRTQWKMGRAKLLAMPFSEHENMIRSQLQRILGPVGFDHNRDIAAIT VNRWSHGYSYFLNSMYDDEEESKRIIAAARRPAGKVAIANSDSDWNPYTHAAIDQAWRAVNELS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70014; Mature: 69883
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITRRDFLNGFALTVAAGLTPLEILRAAPRQISASYYPPSLTGLRGNHDGSFENAHKLG CCCCHHHHHCHHHHHHHCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH RAHHAVNLGGAKVEEHYDLVVVGGGISGLAAAHYYRKKHPQAKVLILDNHDDFGGHAKRN HHHHEEECCCCEECCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC EFKVGNRLMLGYGGTESLQSPKHVFSKEALALMKELTIDIDGLASHFHRNFYPDLKLSRG CEECCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEECCC VFFNKEDFGVDKTVGGDPYLQVADDIDPKRLNARPIRDFINDFPMSKKDRDALIALHTST EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCC RDYLGDMPKNKREAYLAKISYSTYLSRHVGLSATAIRFFQSRSNDFQAVGIDGLPALDAR HHHHCCCCCCCHHHEEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC NLDLPGFHGVAGLGKISAEAEAELRDPYIYHFPDGNASIARLLVRKMIPQAAPGKDMNDI CCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCE VLARFDYSKLDLPENPVRLRLNSTVVRVENAKGPVDVGYLDKGGRLRRVQGRHVVMACYN EEEEECCHHCCCCCCCEEEEECCEEEEEECCCCCEEEEEECCCCCEEEECCCCHHHHHHH MMIPHIMPELENDQKQALAMNVKAPLVYTKVVLKHWDSFMKLGVHELYCPSMPYSRIKMD HHHHHHCCCCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHEEEC YPVDLGGYQHPRKPSEPMCLHMVYVPTIAGSNLDPRTQWKMGRAKLLAMPFSEHENMIRS CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHCCCEEEEECCHHHHHHHHHH QLQRILGPVGFDHNRDIAAITVNRWSHGYSYFLNSMYDDEEESKRIIAAARRPAGKVAIA HHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE NSDSDWNPYTHAAIDQAWRAVNELS CCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure SITRRDFLNGFALTVAAGLTPLEILRAAPRQISASYYPPSLTGLRGNHDGSFENAHKLG CCCHHHHHCHHHHHHHCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH RAHHAVNLGGAKVEEHYDLVVVGGGISGLAAAHYYRKKHPQAKVLILDNHDDFGGHAKRN HHHHEEECCCCEECCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC EFKVGNRLMLGYGGTESLQSPKHVFSKEALALMKELTIDIDGLASHFHRNFYPDLKLSRG CEECCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEECCC VFFNKEDFGVDKTVGGDPYLQVADDIDPKRLNARPIRDFINDFPMSKKDRDALIALHTST EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCC RDYLGDMPKNKREAYLAKISYSTYLSRHVGLSATAIRFFQSRSNDFQAVGIDGLPALDAR HHHHCCCCCCCHHHEEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC NLDLPGFHGVAGLGKISAEAEAELRDPYIYHFPDGNASIARLLVRKMIPQAAPGKDMNDI CCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCE VLARFDYSKLDLPENPVRLRLNSTVVRVENAKGPVDVGYLDKGGRLRRVQGRHVVMACYN EEEEECCHHCCCCCCCEEEEECCEEEEEECCCCCEEEEEECCCCCEEEECCCCHHHHHHH MMIPHIMPELENDQKQALAMNVKAPLVYTKVVLKHWDSFMKLGVHELYCPSMPYSRIKMD HHHHHHCCCCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHEEEC YPVDLGGYQHPRKPSEPMCLHMVYVPTIAGSNLDPRTQWKMGRAKLLAMPFSEHENMIRS CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHCCCEEEEECCHHHHHHHHHH QLQRILGPVGFDHNRDIAAITVNRWSHGYSYFLNSMYDDEEESKRIIAAARRPAGKVAIA HHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE NSDSDWNPYTHAAIDQAWRAVNELS CCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA