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The map label for this gene is cybB [H]

Identifier: 34498505

GI number: 34498505

Start: 3327541

End: 3328086

Strand: Direct

Name: cybB [H]

Synonym: CV_3050

Alternate gene names: 34498505

Gene position: 3327541-3328086 (Clockwise)

Preceding gene: 34498504

Following gene: 34498507

Centisome position: 70.04

GC content: 67.95

Gene sequence:

>546_bases
ATGTTGCGCAACACCTCTCACAGTTACGGCGGAATCGCCCGCGCCCTGCACTGGCTGTGCGCGCTGGCGGTGATCGCCGC
GCTGGTCTTCATCGAACTGAAAGGCAATTTCCCCAAGGGCGACCCGCTCCGCAGCGGCCTGGGCTACGCCCATGTCCAGG
CCGGGCTGATCGTCCTGCTGCTGGTGCTGCCGCGGCTGGCCTGGCGGCTGGGCAATCCCCCGCCCGCCATCGAGCCCGCG
CCCAGCCCGGCCATGAATCTGCTGGCCCACGCCGGCCACTGGGCGCTGTACGCGCTGATGCTGGCCCTGCCGATCCTGGG
CATCGCCTTCATCCAGGCCAATGGCCGCGAAGTCGCCCTGTTCGGCCTGGCGCTCCCCGCCTTCATGCCCAACGATCCGC
CGCTGGGCAAGGAGCTGAAGGAGATCCACGAATTGCTGGGCAATGTGCTGCTGTGGCTGAGCATACTGCACGCCGCCGCC
GCGGTATGGCATCACCGTTTCCTCAAGGATGACACGCTGACCCGGCTGACCGGCCCGATGCGCTGA

Upstream 100 bases:

>100_bases
GGCGCGCGGCATTTCCCCTCCCATTGAAATGGATTAAGACCTGCTTAAGCTTGAGCGGCTAAGCTTGCAGCATGTTCCAA
CCAAAACAACAGGAGCCGAC

Downstream 100 bases:

>100_bases
TTCAGTTCCTGGTCCGGCTGGAGCCGCGCGCCACCAGCCGGCCGGCCAACACCACCTTGCGCAGCGGCCGCTCCGGCTGC
TGCAGCCGCTCCAGCAGCAT

Product: cytochrome b561

Products: NA

Alternate protein names: Cytochrome b-561 [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MLRNTSHSYGGIARALHWLCALAVIAALVFIELKGNFPKGDPLRSGLGYAHVQAGLIVLLLVLPRLAWRLGNPPPAIEPA
PSPAMNLLAHAGHWALYALMLALPILGIAFIQANGREVALFGLALPAFMPNDPPLGKELKEIHELLGNVLLWLSILHAAA
AVWHHRFLKDDTLTRLTGPMR

Sequences:

>Translated_181_residues
MLRNTSHSYGGIARALHWLCALAVIAALVFIELKGNFPKGDPLRSGLGYAHVQAGLIVLLLVLPRLAWRLGNPPPAIEPA
PSPAMNLLAHAGHWALYALMLALPILGIAFIQANGREVALFGLALPAFMPNDPPLGKELKEIHELLGNVLLWLSILHAAA
AVWHHRFLKDDTLTRLTGPMR
>Mature_181_residues
MLRNTSHSYGGIARALHWLCALAVIAALVFIELKGNFPKGDPLRSGLGYAHVQAGLIVLLLVLPRLAWRLGNPPPAIEPA
PSPAMNLLAHAGHWALYALMLALPILGIAFIQANGREVALFGLALPAFMPNDPPLGKELKEIHELLGNVLLWLSILHAAA
AVWHHRFLKDDTLTRLTGPMR

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=161, Percent_Identity=34.1614906832298, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1787296, Length=178, Percent_Identity=31.4606741573034, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI87081903, Length=171, Percent_Identity=39.1812865497076, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 19651; Mature: 19651

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRNTSHSYGGIARALHWLCALAVIAALVFIELKGNFPKGDPLRSGLGYAHVQAGLIVLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHH
LVLPRLAWRLGNPPPAIEPAPSPAMNLLAHAGHWALYALMLALPILGIAFIQANGREVAL
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH
FGLALPAFMPNDPPLGKELKEIHELLGNVLLWLSILHAAAAVWHHRFLKDDTLTRLTGPM
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
R
C
>Mature Secondary Structure
MLRNTSHSYGGIARALHWLCALAVIAALVFIELKGNFPKGDPLRSGLGYAHVQAGLIVLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHH
LVLPRLAWRLGNPPPAIEPAPSPAMNLLAHAGHWALYALMLALPILGIAFIQANGREVAL
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH
FGLALPAFMPNDPPLGKELKEIHELLGNVLLWLSILHAAAAVWHHRFLKDDTLTRLTGPM
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10322012; 11586360; 12142430 [H]