Click here to switch to the map view.

The map label for this gene is rbsD

Identifier: 34498474

GI number: 34498474

Start: 3296712

End: 3297110

Strand: Reverse

Name: rbsD

Synonym: CV_3019

Alternate gene names: 34498474

Gene position: 3297110-3296712 (Counterclockwise)

Preceding gene: 34498475

Following gene: 34498473

Centisome position: 69.4

GC content: 64.66

Gene sequence:

>399_bases
ATGAAGAAGCACGGCCATCTGAACCGCGACATCGCCCGCATTCTGGCGTCCATGGGCCATACCGACAGCCTGGTGATCGC
CGACTGCGGCCTGCCCATCCCGCCCGGCGTGGAATGCGTGGACCTGTCGCTGAAACTGGGGCAGCCCGGCTTCATCGAAA
CCCTGGACAGCATCCTGGCCGATTTCCAGTGCGAGCGCGCGGTGTTCGCCATCGAGTGCCGCCAACACAACCCGGCGGTA
CAGGACAAGGCCGAGCGGATGGCGCAAGCCGGCGCGGCGCTGGATTTCGTCAGCCATGAGGAATTCAAGCAGCGCTGCCA
GGCGGCGCGCGCGGTGATCCGCACCGGCGAATGCACGCCTTACGCCAACGTGATCCTGCATTCCGGCGTGATTTTCTAA

Upstream 100 bases:

>100_bases
GCCGCGCCAACGCGGCCGGCGCGCTGTCGGTCACCCGGCCGGGCGCGCAGGGCGGCATGCCGACGCTGGCCGAGCTGGAA
GCCTTCCTGGAGAACAAAGC

Downstream 100 bases:

>100_bases
GGAGCCGACCATGCAAGTGACCATGCGCGGCATCAGCAAGGCTTTCGGGCCGGTCAAGGTGCTGGAGAACGTGGAGTTCA
CGCTGCGCGGCGGCGAGATC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKKHGHLNRDIARILASMGHTDSLVIADCGLPIPPGVECVDLSLKLGQPGFIETLDSILADFQCERAVFAIECRQHNPAV
QDKAERMAQAGAALDFVSHEEFKQRCQAARAVIRTGECTPYANVILHSGVIF

Sequences:

>Translated_132_residues
MKKHGHLNRDIARILASMGHTDSLVIADCGLPIPPGVECVDLSLKLGQPGFIETLDSILADFQCERAVFAIECRQHNPAV
QDKAERMAQAGAALDFVSHEEFKQRCQAARAVIRTGECTPYANVILHSGVIF
>Mature_132_residues
MKKHGHLNRDIARILASMGHTDSLVIADCGLPIPPGVECVDLSLKLGQPGFIETLDSILADFQCERAVFAIECRQHNPAV
QDKAERMAQAGAALDFVSHEEFKQRCQAARAVIRTGECTPYANVILHSGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=38.8489208633094, Blast_Score=117, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_CHRVO (Q7NTN5)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_902689.1
- HSSP:   P36946
- ProteinModelPortal:   Q7NTN5
- SMR:   Q7NTN5
- GeneID:   2548047
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3019
- NMPDR:   fig|243365.1.peg.3019
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   Q7NTN5
- ProtClustDB:   PRK11797
- BioCyc:   CVIO243365:CV_3019-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14412; Mature: 14412

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 99-99

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHGHLNRDIARILASMGHTDSLVIADCGLPIPPGVECVDLSLKLGQPGFIETLDSILA
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
DFQCERAVFAIECRQHNPAVQDKAERMAQAGAALDFVSHEEFKQRCQAARAVIRTGECTP
HHHHCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
YANVILHSGVIF
HHHHHHHCCCCC
>Mature Secondary Structure
MKKHGHLNRDIARILASMGHTDSLVIADCGLPIPPGVECVDLSLKLGQPGFIETLDSILA
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
DFQCERAVFAIECRQHNPAVQDKAERMAQAGAALDFVSHEEFKQRCQAARAVIRTGECTP
HHHHCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
YANVILHSGVIF
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782